Hb_063943_010

Information

Type -
Description -
Location Contig63943: 2-1609
Sequence    

Annotation

kegg
ID rcu:RCOM_1771090
description hypothetical protein
nr
ID XP_012092620.1
description PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
swissprot
ID Q5RF97
description Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1
trembl
ID A0A067JLL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52065: 50-766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063943_010 0.0 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
2 Hb_146339_010 0.132407085 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
3 Hb_003059_010 0.1405753375 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
4 Hb_089206_010 0.1558827035 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_003175_110 0.1693453361 - - -
6 Hb_183443_010 0.1821384495 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
7 Hb_003124_030 0.1861799556 - - At4g33625-like protein [Brassica napus]
8 Hb_000816_260 0.1896304984 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_000714_040 0.2081882495 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
10 Hb_002851_080 0.2096199554 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
11 Hb_085083_020 0.2112749259 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
12 Hb_003607_070 0.2198359055 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
13 Hb_005523_010 0.2262815321 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
14 Hb_052689_010 0.2280290208 - - heat shock cognate protein [Solanum commersonii]
15 Hb_099270_030 0.2291178987 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
16 Hb_000094_080 0.2292061453 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
17 Hb_013459_010 0.2292521884 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
18 Hb_000404_040 0.230309889 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006618_050 0.2306416484 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
20 Hb_002235_200 0.23164064 - - pattern formation protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_063943_010 Hb_063943_010 Hb_146339_010 Hb_146339_010 Hb_063943_010--Hb_146339_010 Hb_003059_010 Hb_003059_010 Hb_063943_010--Hb_003059_010 Hb_089206_010 Hb_089206_010 Hb_063943_010--Hb_089206_010 Hb_003175_110 Hb_003175_110 Hb_063943_010--Hb_003175_110 Hb_183443_010 Hb_183443_010 Hb_063943_010--Hb_183443_010 Hb_003124_030 Hb_003124_030 Hb_063943_010--Hb_003124_030 Hb_146339_010--Hb_183443_010 Hb_146339_010--Hb_003059_010 Hb_146339_010--Hb_089206_010 Hb_146339_010--Hb_003175_110 Hb_000714_040 Hb_000714_040 Hb_146339_010--Hb_000714_040 Hb_003059_010--Hb_003124_030 Hb_001221_140 Hb_001221_140 Hb_003059_010--Hb_001221_140 Hb_000077_220 Hb_000077_220 Hb_003059_010--Hb_000077_220 Hb_002851_080 Hb_002851_080 Hb_003059_010--Hb_002851_080 Hb_007333_030 Hb_007333_030 Hb_003059_010--Hb_007333_030 Hb_089206_010--Hb_183443_010 Hb_000357_120 Hb_000357_120 Hb_089206_010--Hb_000357_120 Hb_003688_160 Hb_003688_160 Hb_089206_010--Hb_003688_160 Hb_052689_010 Hb_052689_010 Hb_089206_010--Hb_052689_010 Hb_004097_120 Hb_004097_120 Hb_089206_010--Hb_004097_120 Hb_113673_010 Hb_113673_010 Hb_003175_110--Hb_113673_010 Hb_001266_120 Hb_001266_120 Hb_003175_110--Hb_001266_120 Hb_085083_020 Hb_085083_020 Hb_003175_110--Hb_085083_020 Hb_003175_110--Hb_003124_030 Hb_000566_030 Hb_000566_030 Hb_183443_010--Hb_000566_030 Hb_000334_180 Hb_000334_180 Hb_183443_010--Hb_000334_180 Hb_174473_010 Hb_174473_010 Hb_183443_010--Hb_174473_010 Hb_156850_090 Hb_156850_090 Hb_003124_030--Hb_156850_090 Hb_000562_050 Hb_000562_050 Hb_003124_030--Hb_000562_050 Hb_001008_050 Hb_001008_050 Hb_003124_030--Hb_001008_050 Hb_158092_080 Hb_158092_080 Hb_003124_030--Hb_158092_080 Hb_001789_020 Hb_001789_020 Hb_003124_030--Hb_001789_020 Hb_001085_290 Hb_001085_290 Hb_003124_030--Hb_001085_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44509 1.50144 1.32114 0.842708 1.47624 0.959842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.26847 2.14606 3.39719

CAGE analysis