Hb_113673_010

Information

Type -
Description -
Location Contig113673: 68-2067
Sequence    

Annotation

kegg
ID pop:POPTR_1763s00200g
description hypothetical protein
nr
ID XP_006387127.1
description hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
swissprot
ID Q9C7S5
description Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1
trembl
ID U7DYW7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_1763s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113673_010 0.0 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
2 Hb_003175_110 0.191538246 - - -
3 Hb_003327_020 0.2023667122 - - PREDICTED: phytosulfokine receptor 2-like, partial [Jatropha curcas]
4 Hb_000094_040 0.2051048844 - - -
5 Hb_000078_090 0.2133815597 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
6 Hb_010521_030 0.2144805066 - - -
7 Hb_078106_010 0.2203017146 - - seed maturation protein PM37 [Populus trichocarpa]
8 Hb_001079_070 0.2326405227 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
9 Hb_063943_010 0.2408878076 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
10 Hb_001232_100 0.2418076981 - - Heat shock 70 kDa protein, putative [Ricinus communis]
11 Hb_002942_130 0.2473300206 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
12 Hb_000964_170 0.2498275955 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
13 Hb_004875_010 0.2501161393 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
14 Hb_002320_090 0.250715368 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
15 Hb_002943_010 0.2511933104 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
16 Hb_000649_270 0.251426723 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
17 Hb_000041_300 0.2520221217 transcription factor TF Family: SNF2 PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
18 Hb_006846_080 0.2521226962 - - calnexin, putative [Ricinus communis]
19 Hb_001393_010 0.2538558085 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
20 Hb_001951_070 0.253968214 - - putative protein [Arabidopsis thaliana]

Gene co-expression network

sample Hb_113673_010 Hb_113673_010 Hb_003175_110 Hb_003175_110 Hb_113673_010--Hb_003175_110 Hb_003327_020 Hb_003327_020 Hb_113673_010--Hb_003327_020 Hb_000094_040 Hb_000094_040 Hb_113673_010--Hb_000094_040 Hb_000078_090 Hb_000078_090 Hb_113673_010--Hb_000078_090 Hb_010521_030 Hb_010521_030 Hb_113673_010--Hb_010521_030 Hb_078106_010 Hb_078106_010 Hb_113673_010--Hb_078106_010 Hb_063943_010 Hb_063943_010 Hb_003175_110--Hb_063943_010 Hb_001266_120 Hb_001266_120 Hb_003175_110--Hb_001266_120 Hb_085083_020 Hb_085083_020 Hb_003175_110--Hb_085083_020 Hb_146339_010 Hb_146339_010 Hb_003175_110--Hb_146339_010 Hb_003124_030 Hb_003124_030 Hb_003175_110--Hb_003124_030 Hb_065525_070 Hb_065525_070 Hb_003327_020--Hb_065525_070 Hb_052548_010 Hb_052548_010 Hb_003327_020--Hb_052548_010 Hb_005466_010 Hb_005466_010 Hb_003327_020--Hb_005466_010 Hb_000084_140 Hb_000084_140 Hb_003327_020--Hb_000084_140 Hb_023771_020 Hb_023771_020 Hb_003327_020--Hb_023771_020 Hb_000094_040--Hb_000078_090 Hb_000618_090 Hb_000618_090 Hb_000094_040--Hb_000618_090 Hb_000094_040--Hb_063943_010 Hb_000094_040--Hb_010521_030 Hb_001393_010 Hb_001393_010 Hb_000094_040--Hb_001393_010 Hb_010366_010 Hb_010366_010 Hb_000078_090--Hb_010366_010 Hb_001565_060 Hb_001565_060 Hb_000078_090--Hb_001565_060 Hb_000078_090--Hb_001393_010 Hb_000094_080 Hb_000094_080 Hb_000078_090--Hb_000094_080 Hb_010521_020 Hb_010521_020 Hb_010521_030--Hb_010521_020 Hb_010521_030--Hb_003175_110 Hb_104812_010 Hb_104812_010 Hb_010521_030--Hb_104812_010 Hb_000883_030 Hb_000883_030 Hb_010521_030--Hb_000883_030 Hb_119622_010 Hb_119622_010 Hb_010521_030--Hb_119622_010 Hb_001411_050 Hb_001411_050 Hb_078106_010--Hb_001411_050 Hb_006351_060 Hb_006351_060 Hb_078106_010--Hb_006351_060 Hb_006629_020 Hb_006629_020 Hb_078106_010--Hb_006629_020 Hb_000281_070 Hb_000281_070 Hb_078106_010--Hb_000281_070 Hb_006846_080 Hb_006846_080 Hb_078106_010--Hb_006846_080 Hb_078106_010--Hb_023771_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.923287 2.13977 1.15335 1.96941 2.71894 0.156169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.11784 1.14792 3.86502

CAGE analysis