Hb_005466_010

Information

Type -
Description -
Location Contig5466: 3790-6971
Sequence    

Annotation

kegg
ID bdi:104582115
description ATP synthase subunit a
nr
ID ACD02155.1
description ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
swissprot
ID Q04654
description ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 SV=1
trembl
ID B2VPT7
description ATP synthase subunit a (Fragment) OS=Celastrus scandens GN=atp6 PE=4 SV=1
Gene Ontology
ID GO:0005743
description atpase subunit partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005466_010 0.0 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
2 Hb_141990_020 0.2073806968 - - RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Capsid protein; Short=CP; Contains: RecName: Full=Aspartic protease; Short=PR; Contains: RecName: Full=Reverse transcriptase; Short=RT [Petunia vein clearing virus isolate Hohn]
3 Hb_117001_010 0.2154336341 - - -
4 Hb_003327_020 0.2209066415 - - PREDICTED: phytosulfokine receptor 2-like, partial [Jatropha curcas]
5 Hb_000856_320 0.2209482377 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
6 Hb_000518_040 0.23431084 - - -
7 Hb_062273_010 0.240071148 - - ATP synthase F0 subunit 9 [Chara vulgaris]
8 Hb_053079_010 0.244624233 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_005332_150 0.2515947311 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
10 Hb_032264_050 0.2528155267 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
11 Hb_009434_060 0.2528452296 - - T4.15 [Malus x robusta]
12 Hb_144027_010 0.2553519408 - - -
13 Hb_002030_050 0.2556157293 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
14 Hb_003106_250 0.2596994456 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
15 Hb_053998_020 0.2602286593 - - -
16 Hb_102602_020 0.2622989283 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
17 Hb_007543_020 0.2630653495 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
18 Hb_041813_090 0.2633788646 - - hypothetical protein EUGRSUZ_J01097 [Eucalyptus grandis]
19 Hb_013420_060 0.2655304611 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
20 Hb_072212_020 0.2688101855 - - hypothetical protein B456_001G162300 [Gossypium raimondii]

Gene co-expression network

sample Hb_005466_010 Hb_005466_010 Hb_141990_020 Hb_141990_020 Hb_005466_010--Hb_141990_020 Hb_117001_010 Hb_117001_010 Hb_005466_010--Hb_117001_010 Hb_003327_020 Hb_003327_020 Hb_005466_010--Hb_003327_020 Hb_000856_320 Hb_000856_320 Hb_005466_010--Hb_000856_320 Hb_000518_040 Hb_000518_040 Hb_005466_010--Hb_000518_040 Hb_062273_010 Hb_062273_010 Hb_005466_010--Hb_062273_010 Hb_141990_020--Hb_000856_320 Hb_141990_020--Hb_117001_010 Hb_010565_030 Hb_010565_030 Hb_141990_020--Hb_010565_030 Hb_001221_360 Hb_001221_360 Hb_141990_020--Hb_001221_360 Hb_003106_250 Hb_003106_250 Hb_141990_020--Hb_003106_250 Hb_144027_010 Hb_144027_010 Hb_117001_010--Hb_144027_010 Hb_117001_010--Hb_000518_040 Hb_045785_010 Hb_045785_010 Hb_117001_010--Hb_045785_010 Hb_004899_210 Hb_004899_210 Hb_117001_010--Hb_004899_210 Hb_007575_020 Hb_007575_020 Hb_117001_010--Hb_007575_020 Hb_104735_020 Hb_104735_020 Hb_117001_010--Hb_104735_020 Hb_065525_070 Hb_065525_070 Hb_003327_020--Hb_065525_070 Hb_113673_010 Hb_113673_010 Hb_003327_020--Hb_113673_010 Hb_052548_010 Hb_052548_010 Hb_003327_020--Hb_052548_010 Hb_000084_140 Hb_000084_140 Hb_003327_020--Hb_000084_140 Hb_023771_020 Hb_023771_020 Hb_003327_020--Hb_023771_020 Hb_000958_100 Hb_000958_100 Hb_000856_320--Hb_000958_100 Hb_017098_060 Hb_017098_060 Hb_000856_320--Hb_017098_060 Hb_002188_030 Hb_002188_030 Hb_000856_320--Hb_002188_030 Hb_003494_130 Hb_003494_130 Hb_000856_320--Hb_003494_130 Hb_000518_040--Hb_104735_020 Hb_000518_040--Hb_144027_010 Hb_006405_040 Hb_006405_040 Hb_000518_040--Hb_006405_040 Hb_000518_040--Hb_062273_010 Hb_072212_020 Hb_072212_020 Hb_000518_040--Hb_072212_020 Hb_062273_010--Hb_072212_020 Hb_042463_020 Hb_042463_020 Hb_062273_010--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_062273_010--Hb_034168_070 Hb_062192_030 Hb_062192_030 Hb_062273_010--Hb_062192_030 Hb_062273_010--Hb_104735_020 Hb_189099_020 Hb_189099_020 Hb_062273_010--Hb_189099_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0451514 0.180664 0.0900879 0.016958 0.040275 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0668245 0.0290022 0.520132

CAGE analysis