Hb_141990_020

Information

Type -
Description -
Location Contig141990: 26973-30512
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID Q6XKE6.1
description RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Capsid protein; Short=CP; Contains: RecName: Full=Aspartic protease; Short=PR; Contains: RecName: Full=Reverse transcriptase; Short=RT [Petunia vein clearing virus isolate Hohn]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID U5FTR1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01890g PE=4 SV=1
Gene Ontology
ID GO:0003676
description reverse transcriptase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141990_020 0.0 - - RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Capsid protein; Short=CP; Contains: RecName: Full=Aspartic protease; Short=PR; Contains: RecName: Full=Reverse transcriptase; Short=RT [Petunia vein clearing virus isolate Hohn]
2 Hb_000856_320 0.1813754389 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
3 Hb_005466_010 0.2073806968 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
4 Hb_117001_010 0.2201478232 - - -
5 Hb_010565_030 0.2291769394 - - hypothetical protein VITISV_006810 [Vitis vinifera]
6 Hb_001221_360 0.2309294972 - - late embryogenesis abundant, putative [Ricinus communis]
7 Hb_003106_250 0.232674694 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
8 Hb_102602_020 0.2395883827 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
9 Hb_000518_040 0.2409107581 - - -
10 Hb_000958_100 0.2418943042 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
11 Hb_144027_010 0.2428283989 - - -
12 Hb_011472_050 0.2452281389 - - -
13 Hb_004884_210 0.2457302768 - - PREDICTED: mitoferrin-like [Jatropha curcas]
14 Hb_119832_010 0.2493389277 - - -
15 Hb_000311_110 0.2501197607 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_004242_120 0.250581858 - - Organic cation transporter, putative [Ricinus communis]
17 Hb_007317_130 0.2508039852 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
18 Hb_018105_010 0.2514782745 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
19 Hb_042463_050 0.2543966954 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002030_050 0.2546943523 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]

Gene co-expression network

sample Hb_141990_020 Hb_141990_020 Hb_000856_320 Hb_000856_320 Hb_141990_020--Hb_000856_320 Hb_005466_010 Hb_005466_010 Hb_141990_020--Hb_005466_010 Hb_117001_010 Hb_117001_010 Hb_141990_020--Hb_117001_010 Hb_010565_030 Hb_010565_030 Hb_141990_020--Hb_010565_030 Hb_001221_360 Hb_001221_360 Hb_141990_020--Hb_001221_360 Hb_003106_250 Hb_003106_250 Hb_141990_020--Hb_003106_250 Hb_000958_100 Hb_000958_100 Hb_000856_320--Hb_000958_100 Hb_017098_060 Hb_017098_060 Hb_000856_320--Hb_017098_060 Hb_002188_030 Hb_002188_030 Hb_000856_320--Hb_002188_030 Hb_000856_320--Hb_005466_010 Hb_003494_130 Hb_003494_130 Hb_000856_320--Hb_003494_130 Hb_005466_010--Hb_117001_010 Hb_003327_020 Hb_003327_020 Hb_005466_010--Hb_003327_020 Hb_000518_040 Hb_000518_040 Hb_005466_010--Hb_000518_040 Hb_062273_010 Hb_062273_010 Hb_005466_010--Hb_062273_010 Hb_144027_010 Hb_144027_010 Hb_117001_010--Hb_144027_010 Hb_117001_010--Hb_000518_040 Hb_045785_010 Hb_045785_010 Hb_117001_010--Hb_045785_010 Hb_004899_210 Hb_004899_210 Hb_117001_010--Hb_004899_210 Hb_007575_020 Hb_007575_020 Hb_117001_010--Hb_007575_020 Hb_104735_020 Hb_104735_020 Hb_117001_010--Hb_104735_020 Hb_005542_010 Hb_005542_010 Hb_010565_030--Hb_005542_010 Hb_011472_050 Hb_011472_050 Hb_010565_030--Hb_011472_050 Hb_000173_110 Hb_000173_110 Hb_010565_030--Hb_000173_110 Hb_011609_210 Hb_011609_210 Hb_010565_030--Hb_011609_210 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110 Hb_006940_020 Hb_006940_020 Hb_001221_360--Hb_006940_020 Hb_000997_140 Hb_000997_140 Hb_001221_360--Hb_000997_140 Hb_001221_360--Hb_010565_030 Hb_003029_140 Hb_003029_140 Hb_001221_360--Hb_003029_140 Hb_140389_010 Hb_140389_010 Hb_001221_360--Hb_140389_010 Hb_007576_150 Hb_007576_150 Hb_001221_360--Hb_007576_150 Hb_004884_210 Hb_004884_210 Hb_003106_250--Hb_004884_210 Hb_001229_030 Hb_001229_030 Hb_003106_250--Hb_001229_030 Hb_004976_080 Hb_004976_080 Hb_003106_250--Hb_004976_080 Hb_001405_230 Hb_001405_230 Hb_003106_250--Hb_001405_230 Hb_003106_250--Hb_011472_050 Hb_000072_240 Hb_000072_240 Hb_003106_250--Hb_000072_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0117626 0.124892 0.0270251 0.0212126 0.00588607 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0209833 0.0200954 0.0124782 0.268995

CAGE analysis