Hb_002188_030

Information

Type -
Description -
Location Contig2188: 15402-19658
Sequence    

Annotation

kegg
ID rcu:RCOM_1382980
description sterol regulatory element-binding protein site 2 protease, putative
nr
ID XP_012093175.1
description PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9LMU1
description Probable zinc metallopeptidase EGY3, chloroplastic OS=Arabidopsis thaliana GN=EGY3 PE=2 SV=1
trembl
ID B9S7Z4
description Sterol regulatory element-binding protein site 2 protease, putative OS=Ricinus communis GN=RCOM_1382980 PE=4 SV=1
Gene Ontology
ID GO:0004177
description probable zinc metallopeptidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22539: 15337-19150 , PASA_asmbl_22540: 19272-19613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_030 0.0 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000556_070 0.1568926328 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
3 Hb_000107_090 0.1589231093 - - PREDICTED: kinesin KP1 [Jatropha curcas]
4 Hb_000574_320 0.165437826 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
5 Hb_140389_010 0.1666159064 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_020400_020 0.1723761237 - - starch synthase isoform II [Manihot esculenta]
7 Hb_005015_020 0.1749819963 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
8 Hb_002010_110 0.1757431743 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
9 Hb_024066_040 0.1763659609 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_000212_370 0.1808367783 - - thioredoxin f-type, putative [Ricinus communis]
11 Hb_001221_400 0.1834308906 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
12 Hb_008165_050 0.183523446 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_000665_200 0.1836361613 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_002811_050 0.183666311 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
15 Hb_000035_060 0.1842696037 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
16 Hb_002073_090 0.1871643273 - - PREDICTED: copper transporter 6-like [Jatropha curcas]
17 Hb_004678_010 0.187774199 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
18 Hb_110252_010 0.1879914731 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
19 Hb_019837_010 0.1891991946 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003494_130 0.1896351446 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_002188_030 Hb_002188_030 Hb_000556_070 Hb_000556_070 Hb_002188_030--Hb_000556_070 Hb_000107_090 Hb_000107_090 Hb_002188_030--Hb_000107_090 Hb_000574_320 Hb_000574_320 Hb_002188_030--Hb_000574_320 Hb_140389_010 Hb_140389_010 Hb_002188_030--Hb_140389_010 Hb_020400_020 Hb_020400_020 Hb_002188_030--Hb_020400_020 Hb_005015_020 Hb_005015_020 Hb_002188_030--Hb_005015_020 Hb_000035_060 Hb_000035_060 Hb_000556_070--Hb_000035_060 Hb_000589_420 Hb_000589_420 Hb_000556_070--Hb_000589_420 Hb_004678_010 Hb_004678_010 Hb_000556_070--Hb_004678_010 Hb_000556_070--Hb_000574_320 Hb_000069_500 Hb_000069_500 Hb_000556_070--Hb_000069_500 Hb_001141_060 Hb_001141_060 Hb_000556_070--Hb_001141_060 Hb_008165_050 Hb_008165_050 Hb_000107_090--Hb_008165_050 Hb_000272_030 Hb_000272_030 Hb_000107_090--Hb_000272_030 Hb_004117_370 Hb_004117_370 Hb_000107_090--Hb_004117_370 Hb_000260_410 Hb_000260_410 Hb_000107_090--Hb_000260_410 Hb_000787_210 Hb_000787_210 Hb_000107_090--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_000107_090--Hb_024066_040 Hb_000574_320--Hb_140389_010 Hb_000574_320--Hb_000069_500 Hb_011472_050 Hb_011472_050 Hb_000574_320--Hb_011472_050 Hb_006277_080 Hb_006277_080 Hb_000574_320--Hb_006277_080 Hb_002030_050 Hb_002030_050 Hb_000574_320--Hb_002030_050 Hb_140389_010--Hb_006277_080 Hb_012539_040 Hb_012539_040 Hb_140389_010--Hb_012539_040 Hb_140389_010--Hb_005015_020 Hb_004324_120 Hb_004324_120 Hb_140389_010--Hb_004324_120 Hb_005288_180 Hb_005288_180 Hb_140389_010--Hb_005288_180 Hb_000538_300 Hb_000538_300 Hb_020400_020--Hb_000538_300 Hb_000084_140 Hb_000084_140 Hb_020400_020--Hb_000084_140 Hb_004109_130 Hb_004109_130 Hb_020400_020--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_020400_020--Hb_065525_070 Hb_001969_130 Hb_001969_130 Hb_020400_020--Hb_001969_130 Hb_001579_150 Hb_001579_150 Hb_020400_020--Hb_001579_150 Hb_005015_020--Hb_004324_120 Hb_004346_040 Hb_004346_040 Hb_005015_020--Hb_004346_040 Hb_005015_020--Hb_005288_180 Hb_005015_020--Hb_012539_040 Hb_000446_040 Hb_000446_040 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83575 70.1343 54.9312 38.1184 5.1655 4.46819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80466 6.45066 10.3599 3.06727 117.451

CAGE analysis