Hb_003327_020

Information

Type -
Description -
Location Contig3327: 4238-7757
Sequence    

Annotation

kegg
ID tcc:TCM_027065
description Receptor like protein 15, putative
nr
ID XP_012089522.1
description PREDICTED: phytosulfokine receptor 2-like, partial [Jatropha curcas]
swissprot
ID Q8GT95
description Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1
trembl
ID A0A067JK04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00346 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003327_020 0.0 - - PREDICTED: phytosulfokine receptor 2-like, partial [Jatropha curcas]
2 Hb_065525_070 0.1960957555 - - unnamed protein product [Homo sapiens]
3 Hb_113673_010 0.2023667122 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
4 Hb_052548_010 0.2051776154 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
5 Hb_005466_010 0.2209066415 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
6 Hb_000084_140 0.2392419943 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
7 Hb_023771_020 0.2435737766 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Jatropha curcas]
8 Hb_032264_050 0.2481246444 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
9 Hb_000076_050 0.2486510256 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
10 Hb_004785_070 0.2498054028 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
11 Hb_003077_130 0.2500561232 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
12 Hb_002399_020 0.2511595259 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
13 Hb_002030_050 0.2511738483 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
14 Hb_007933_030 0.2533836485 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
15 Hb_003494_130 0.253781829 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
16 Hb_000958_100 0.2538541825 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_010757_030 0.2540054882 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_023675_030 0.2565301807 - - -
19 Hb_020400_020 0.2577242803 - - starch synthase isoform II [Manihot esculenta]
20 Hb_078106_010 0.2582824527 - - seed maturation protein PM37 [Populus trichocarpa]

Gene co-expression network

sample Hb_003327_020 Hb_003327_020 Hb_065525_070 Hb_065525_070 Hb_003327_020--Hb_065525_070 Hb_113673_010 Hb_113673_010 Hb_003327_020--Hb_113673_010 Hb_052548_010 Hb_052548_010 Hb_003327_020--Hb_052548_010 Hb_005466_010 Hb_005466_010 Hb_003327_020--Hb_005466_010 Hb_000084_140 Hb_000084_140 Hb_003327_020--Hb_000084_140 Hb_023771_020 Hb_023771_020 Hb_003327_020--Hb_023771_020 Hb_001109_160 Hb_001109_160 Hb_065525_070--Hb_001109_160 Hb_000976_130 Hb_000976_130 Hb_065525_070--Hb_000976_130 Hb_003029_140 Hb_003029_140 Hb_065525_070--Hb_003029_140 Hb_020400_020 Hb_020400_020 Hb_065525_070--Hb_020400_020 Hb_008616_040 Hb_008616_040 Hb_065525_070--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_065525_070--Hb_001250_020 Hb_003175_110 Hb_003175_110 Hb_113673_010--Hb_003175_110 Hb_000094_040 Hb_000094_040 Hb_113673_010--Hb_000094_040 Hb_000078_090 Hb_000078_090 Hb_113673_010--Hb_000078_090 Hb_010521_030 Hb_010521_030 Hb_113673_010--Hb_010521_030 Hb_078106_010 Hb_078106_010 Hb_113673_010--Hb_078106_010 Hb_002960_040 Hb_002960_040 Hb_052548_010--Hb_002960_040 Hb_052548_010--Hb_065525_070 Hb_002783_070 Hb_002783_070 Hb_052548_010--Hb_002783_070 Hb_052548_010--Hb_000976_130 Hb_002030_050 Hb_002030_050 Hb_052548_010--Hb_002030_050 Hb_141990_020 Hb_141990_020 Hb_005466_010--Hb_141990_020 Hb_117001_010 Hb_117001_010 Hb_005466_010--Hb_117001_010 Hb_000856_320 Hb_000856_320 Hb_005466_010--Hb_000856_320 Hb_000518_040 Hb_000518_040 Hb_005466_010--Hb_000518_040 Hb_062273_010 Hb_062273_010 Hb_005466_010--Hb_062273_010 Hb_000084_140--Hb_020400_020 Hb_007933_030 Hb_007933_030 Hb_000084_140--Hb_007933_030 Hb_004109_130 Hb_004109_130 Hb_000084_140--Hb_004109_130 Hb_000084_140--Hb_065525_070 Hb_000538_300 Hb_000538_300 Hb_000084_140--Hb_000538_300 Hb_000084_140--Hb_000976_130 Hb_001758_110 Hb_001758_110 Hb_023771_020--Hb_001758_110 Hb_002399_020 Hb_002399_020 Hb_023771_020--Hb_002399_020 Hb_000762_110 Hb_000762_110 Hb_023771_020--Hb_000762_110 Hb_006198_190 Hb_006198_190 Hb_023771_020--Hb_006198_190 Hb_000281_070 Hb_000281_070 Hb_023771_020--Hb_000281_070 Hb_023771_020--Hb_078106_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.210895 0.682878 0.223102 0.468045 0.519515 0.0134773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0275486 0.257749 0.209232 2.18044

CAGE analysis