Hb_006198_190

Information

Type -
Description -
Location Contig6198: 124370-128581
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24310g
description POPTRDRAFT_816898; hypothetical protein
nr
ID XP_012085121.1
description PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
swissprot
ID Q6GLM5
description Desumoylating isopeptidase 1 OS=Xenopus laevis GN=desi1 PE=2 SV=1
trembl
ID A0A067JR10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17554 PE=4 SV=1
Gene Ontology
ID GO:0005634
description desumoylating isopeptidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51390: 124394-128582 , PASA_asmbl_51391: 127230-127665
cDNA
(Sanger)
(ID:Location)		 051_B10.ab1: 124883-128493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_190 0.0 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
2 Hb_001758_110 0.1180429926 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_010620_050 0.1296511164 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
4 Hb_003847_040 0.1364440482 - - adenosine diphosphatase, putative [Ricinus communis]
5 Hb_006916_050 0.1445997654 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_012506_020 0.1456097735 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
7 Hb_000069_360 0.1494062479 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000107_250 0.1495483097 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
9 Hb_003071_030 0.1497413787 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
10 Hb_000562_070 0.1515732712 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
11 Hb_004324_210 0.1535316697 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_002107_050 0.1542409478 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
13 Hb_000762_110 0.1547649473 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
14 Hb_003470_070 0.1553832357 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
15 Hb_004705_160 0.1593253694 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
16 Hb_001021_210 0.1601596677 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
17 Hb_023771_020 0.1612119251 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Jatropha curcas]
18 Hb_000208_190 0.1615437346 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
19 Hb_000302_190 0.1620190938 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
20 Hb_000281_070 0.1620277345 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]

Gene co-expression network

sample Hb_006198_190 Hb_006198_190 Hb_001758_110 Hb_001758_110 Hb_006198_190--Hb_001758_110 Hb_010620_050 Hb_010620_050 Hb_006198_190--Hb_010620_050 Hb_003847_040 Hb_003847_040 Hb_006198_190--Hb_003847_040 Hb_006916_050 Hb_006916_050 Hb_006198_190--Hb_006916_050 Hb_012506_020 Hb_012506_020 Hb_006198_190--Hb_012506_020 Hb_000069_360 Hb_000069_360 Hb_006198_190--Hb_000069_360 Hb_006351_060 Hb_006351_060 Hb_001758_110--Hb_006351_060 Hb_023771_020 Hb_023771_020 Hb_001758_110--Hb_023771_020 Hb_000281_070 Hb_000281_070 Hb_001758_110--Hb_000281_070 Hb_078106_010 Hb_078106_010 Hb_001758_110--Hb_078106_010 Hb_000976_130 Hb_000976_130 Hb_001758_110--Hb_000976_130 Hb_002107_050 Hb_002107_050 Hb_010620_050--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_010620_050--Hb_012779_080 Hb_003071_030 Hb_003071_030 Hb_010620_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_138585_030 Hb_138585_030 Hb_010620_050--Hb_138585_030 Hb_009288_040 Hb_009288_040 Hb_010620_050--Hb_009288_040 Hb_000638_060 Hb_000638_060 Hb_003847_040--Hb_000638_060 Hb_001411_130 Hb_001411_130 Hb_003847_040--Hb_001411_130 Hb_026549_070 Hb_026549_070 Hb_003847_040--Hb_026549_070 Hb_000959_300 Hb_000959_300 Hb_003847_040--Hb_000959_300 Hb_001195_660 Hb_001195_660 Hb_003847_040--Hb_001195_660 Hb_000414_080 Hb_000414_080 Hb_003847_040--Hb_000414_080 Hb_002249_080 Hb_002249_080 Hb_006916_050--Hb_002249_080 Hb_068079_010 Hb_068079_010 Hb_006916_050--Hb_068079_010 Hb_000376_210 Hb_000376_210 Hb_006916_050--Hb_000376_210 Hb_000617_250 Hb_000617_250 Hb_006916_050--Hb_000617_250 Hb_002828_060 Hb_002828_060 Hb_006916_050--Hb_002828_060 Hb_004705_160 Hb_004705_160 Hb_006916_050--Hb_004705_160 Hb_000208_190 Hb_000208_190 Hb_012506_020--Hb_000208_190 Hb_000363_290 Hb_000363_290 Hb_012506_020--Hb_000363_290 Hb_012506_020--Hb_004705_160 Hb_000107_340 Hb_000107_340 Hb_012506_020--Hb_000107_340 Hb_159809_060 Hb_159809_060 Hb_012506_020--Hb_159809_060 Hb_022378_010 Hb_022378_010 Hb_012506_020--Hb_022378_010 Hb_000566_010 Hb_000566_010 Hb_000069_360--Hb_000566_010 Hb_000327_200 Hb_000327_200 Hb_000069_360--Hb_000327_200 Hb_003994_080 Hb_003994_080 Hb_000069_360--Hb_003994_080 Hb_000140_060 Hb_000140_060 Hb_000069_360--Hb_000140_060 Hb_003752_090 Hb_003752_090 Hb_000069_360--Hb_003752_090 Hb_003020_250 Hb_003020_250 Hb_000069_360--Hb_003020_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02845 23.7645 42.4102 38.7481 25.5157 5.83692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.16429 11.5219 8.30992 8.62416 51.0457

CAGE analysis