Hb_001758_110

Information

Type -
Description -
Location Contig1758: 148420-153482
Sequence    

Annotation

kegg
ID rcu:RCOM_0306980
description Ran GTPase binding protein, putative
nr
ID XP_002533695.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9T626
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0306980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16842: 148110-153505 , PASA_asmbl_16843: 152165-152697 , PASA_asmbl_16844: 152698-152964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001758_110 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_006198_190 0.1180429926 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
3 Hb_006351_060 0.1314938401 - - PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
4 Hb_023771_020 0.1399873114 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Jatropha curcas]
5 Hb_000281_070 0.147110742 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
6 Hb_078106_010 0.170160806 - - seed maturation protein PM37 [Populus trichocarpa]
7 Hb_000976_130 0.1784843606 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
8 Hb_001411_050 0.1821315629 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
9 Hb_004324_210 0.1845757858 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_071079_020 0.1854547293 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
11 Hb_000762_110 0.1865191377 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
12 Hb_012799_190 0.1870366254 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
13 Hb_005063_080 0.1881264502 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
14 Hb_005532_020 0.1887400427 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
15 Hb_000665_270 0.1899615344 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
16 Hb_003862_040 0.1943483185 - - Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_000042_050 0.1949623057 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
18 Hb_001053_020 0.1959317967 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
19 Hb_000031_100 0.1959647529 - - amine oxidase, putative [Ricinus communis]
20 Hb_003470_070 0.1968538874 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]

Gene co-expression network

sample Hb_001758_110 Hb_001758_110 Hb_006198_190 Hb_006198_190 Hb_001758_110--Hb_006198_190 Hb_006351_060 Hb_006351_060 Hb_001758_110--Hb_006351_060 Hb_023771_020 Hb_023771_020 Hb_001758_110--Hb_023771_020 Hb_000281_070 Hb_000281_070 Hb_001758_110--Hb_000281_070 Hb_078106_010 Hb_078106_010 Hb_001758_110--Hb_078106_010 Hb_000976_130 Hb_000976_130 Hb_001758_110--Hb_000976_130 Hb_010620_050 Hb_010620_050 Hb_006198_190--Hb_010620_050 Hb_003847_040 Hb_003847_040 Hb_006198_190--Hb_003847_040 Hb_006916_050 Hb_006916_050 Hb_006198_190--Hb_006916_050 Hb_012506_020 Hb_012506_020 Hb_006198_190--Hb_012506_020 Hb_000069_360 Hb_000069_360 Hb_006198_190--Hb_000069_360 Hb_006351_060--Hb_000281_070 Hb_006351_060--Hb_078106_010 Hb_006351_060--Hb_023771_020 Hb_006351_060--Hb_006198_190 Hb_003470_070 Hb_003470_070 Hb_006351_060--Hb_003470_070 Hb_002399_020 Hb_002399_020 Hb_023771_020--Hb_002399_020 Hb_000762_110 Hb_000762_110 Hb_023771_020--Hb_000762_110 Hb_023771_020--Hb_006198_190 Hb_023771_020--Hb_000281_070 Hb_023771_020--Hb_078106_010 Hb_000224_220 Hb_000224_220 Hb_000281_070--Hb_000224_220 Hb_000281_070--Hb_003470_070 Hb_006911_070 Hb_006911_070 Hb_000281_070--Hb_006911_070 Hb_005063_080 Hb_005063_080 Hb_000281_070--Hb_005063_080 Hb_001411_050 Hb_001411_050 Hb_000281_070--Hb_001411_050 Hb_001408_030 Hb_001408_030 Hb_000281_070--Hb_001408_030 Hb_078106_010--Hb_001411_050 Hb_006629_020 Hb_006629_020 Hb_078106_010--Hb_006629_020 Hb_078106_010--Hb_000281_070 Hb_006846_080 Hb_006846_080 Hb_078106_010--Hb_006846_080 Hb_008616_040 Hb_008616_040 Hb_000976_130--Hb_008616_040 Hb_001053_020 Hb_001053_020 Hb_000976_130--Hb_001053_020 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_001250_020 Hb_001250_020 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_012799_190 Hb_012799_190 Hb_000976_130--Hb_012799_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1167 9.7131 15.5631 13.0953 11.5746 1.17393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24145 2.50002 1.13674 1.87506 25.1276

CAGE analysis