Hb_078106_010

Information

Type -
Description -
Location Contig78106: 3642-5990
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02100g
description POPTRDRAFT_558228; seed maturation protein PM37
nr
ID XP_002313505.1
description seed maturation protein PM37 [Populus trichocarpa]
swissprot
ID Q04960
description DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1
trembl
ID B9HQ81
description Seed maturation protein PM37 OS=Populus trichocarpa GN=POPTR_0009s02100g PE=3 SV=1
Gene Ontology
ID GO:0005524
description dnaj protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57973: 3675-6160 , PASA_asmbl_57974: 3675-6106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078106_010 0.0 - - seed maturation protein PM37 [Populus trichocarpa]
2 Hb_001411_050 0.1559520595 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
3 Hb_006351_060 0.1582468213 - - PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
4 Hb_006629_020 0.1619233449 - - ferric reductase oxidase [Manihot esculenta]
5 Hb_000281_070 0.1619547317 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
6 Hb_006846_080 0.1654333843 - - calnexin, putative [Ricinus communis]
7 Hb_023771_020 0.1672073514 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Jatropha curcas]
8 Hb_000964_170 0.1699658446 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
9 Hb_001758_110 0.170160806 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_002399_020 0.1732600375 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
11 Hb_004875_010 0.1747000001 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
12 Hb_000434_010 0.1751729879 - - PREDICTED: protein starmaker [Jatropha curcas]
13 Hb_000264_230 0.1761630536 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
14 Hb_006198_190 0.1769922663 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
15 Hb_003470_070 0.179323681 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
16 Hb_001411_030 0.1793764198 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
17 Hb_020805_120 0.1805524208 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
18 Hb_001579_200 0.1823457319 - - nucleoredoxin, putative [Ricinus communis]
19 Hb_000922_220 0.1826615331 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
20 Hb_000359_220 0.1832028346 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_078106_010 Hb_078106_010 Hb_001411_050 Hb_001411_050 Hb_078106_010--Hb_001411_050 Hb_006351_060 Hb_006351_060 Hb_078106_010--Hb_006351_060 Hb_006629_020 Hb_006629_020 Hb_078106_010--Hb_006629_020 Hb_000281_070 Hb_000281_070 Hb_078106_010--Hb_000281_070 Hb_006846_080 Hb_006846_080 Hb_078106_010--Hb_006846_080 Hb_023771_020 Hb_023771_020 Hb_078106_010--Hb_023771_020 Hb_001579_200 Hb_001579_200 Hb_001411_050--Hb_001579_200 Hb_000359_220 Hb_000359_220 Hb_001411_050--Hb_000359_220 Hb_006916_030 Hb_006916_030 Hb_001411_050--Hb_006916_030 Hb_001411_050--Hb_006846_080 Hb_004225_040 Hb_004225_040 Hb_001411_050--Hb_004225_040 Hb_001140_180 Hb_001140_180 Hb_001411_050--Hb_001140_180 Hb_001758_110 Hb_001758_110 Hb_006351_060--Hb_001758_110 Hb_006351_060--Hb_000281_070 Hb_006351_060--Hb_023771_020 Hb_006198_190 Hb_006198_190 Hb_006351_060--Hb_006198_190 Hb_003470_070 Hb_003470_070 Hb_006351_060--Hb_003470_070 Hb_167973_010 Hb_167973_010 Hb_006629_020--Hb_167973_010 Hb_005799_020 Hb_005799_020 Hb_006629_020--Hb_005799_020 Hb_006573_010 Hb_006573_010 Hb_006629_020--Hb_006573_010 Hb_000922_220 Hb_000922_220 Hb_006629_020--Hb_000922_220 Hb_004875_010 Hb_004875_010 Hb_006629_020--Hb_004875_010 Hb_000224_220 Hb_000224_220 Hb_000281_070--Hb_000224_220 Hb_000281_070--Hb_003470_070 Hb_006911_070 Hb_006911_070 Hb_000281_070--Hb_006911_070 Hb_005063_080 Hb_005063_080 Hb_000281_070--Hb_005063_080 Hb_000281_070--Hb_001411_050 Hb_001408_030 Hb_001408_030 Hb_000281_070--Hb_001408_030 Hb_005914_040 Hb_005914_040 Hb_006846_080--Hb_005914_040 Hb_000025_500 Hb_000025_500 Hb_006846_080--Hb_000025_500 Hb_002399_020 Hb_002399_020 Hb_006846_080--Hb_002399_020 Hb_010757_030 Hb_010757_030 Hb_006846_080--Hb_010757_030 Hb_003632_030 Hb_003632_030 Hb_006846_080--Hb_003632_030 Hb_006846_080--Hb_004225_040 Hb_023771_020--Hb_001758_110 Hb_023771_020--Hb_002399_020 Hb_000762_110 Hb_000762_110 Hb_023771_020--Hb_000762_110 Hb_023771_020--Hb_006198_190 Hb_023771_020--Hb_000281_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.6239 260.585 128.203 272.924 247.639 56.7121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4972 34.6822 39.7152 70.579 410.497

CAGE analysis