Hb_000281_070

Information

Type -
Description -
Location Contig281: 77272-81875
Sequence    

Annotation

kegg
ID rcu:RCOM_0342910
description rubisco subunit binding-protein beta subunit, rubb, putative
nr
ID XP_002523404.1
description rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
swissprot
ID P08927
description RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2
trembl
ID B9SBN5
description Rubisco subunit binding-protein beta subunit, rubb, putative OS=Ricinus communis GN=RCOM_0342910 PE=3 SV=1
Gene Ontology
ID GO:0005737
description ru large subunit-binding protein subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29339: 77305-81752 , PASA_asmbl_29340: 78497-79011
cDNA
(Sanger)
(ID:Location)		 025_K14.ab1: 77317-79392

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_070 0.0 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
2 Hb_000224_220 0.1200441519 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
3 Hb_003470_070 0.1225019121 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
4 Hb_006911_070 0.1307154791 - - 50S ribosomal protein L1p, putative [Ricinus communis]
5 Hb_005063_080 0.1341690548 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
6 Hb_001411_050 0.1345846006 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
7 Hb_001408_030 0.1370300509 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
8 Hb_006351_060 0.1374098576 - - PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
9 Hb_000964_170 0.1389278276 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
10 Hb_001437_120 0.1396938217 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
11 Hb_001140_180 0.1407220355 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
12 Hb_007894_190 0.141077701 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
13 Hb_000562_070 0.1417663505 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
14 Hb_000302_190 0.1420072683 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
15 Hb_004225_040 0.1429886372 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
16 Hb_003734_080 0.1449829106 - - myosin vIII, putative [Ricinus communis]
17 Hb_001758_110 0.147110742 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_006916_030 0.1471693462 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
19 Hb_002447_050 0.1471696509 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_005618_150 0.1480345591 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000281_070 Hb_000281_070 Hb_000224_220 Hb_000224_220 Hb_000281_070--Hb_000224_220 Hb_003470_070 Hb_003470_070 Hb_000281_070--Hb_003470_070 Hb_006911_070 Hb_006911_070 Hb_000281_070--Hb_006911_070 Hb_005063_080 Hb_005063_080 Hb_000281_070--Hb_005063_080 Hb_001411_050 Hb_001411_050 Hb_000281_070--Hb_001411_050 Hb_001408_030 Hb_001408_030 Hb_000281_070--Hb_001408_030 Hb_000302_190 Hb_000302_190 Hb_000224_220--Hb_000302_190 Hb_004225_040 Hb_004225_040 Hb_000224_220--Hb_004225_040 Hb_005701_090 Hb_005701_090 Hb_000224_220--Hb_005701_090 Hb_001140_180 Hb_001140_180 Hb_000224_220--Hb_001140_180 Hb_000771_170 Hb_000771_170 Hb_000224_220--Hb_000771_170 Hb_001279_090 Hb_001279_090 Hb_000224_220--Hb_001279_090 Hb_001427_210 Hb_001427_210 Hb_003470_070--Hb_001427_210 Hb_000562_070 Hb_000562_070 Hb_003470_070--Hb_000562_070 Hb_005181_040 Hb_005181_040 Hb_003470_070--Hb_005181_040 Hb_001040_070 Hb_001040_070 Hb_003470_070--Hb_001040_070 Hb_001411_030 Hb_001411_030 Hb_003470_070--Hb_001411_030 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340 Hb_001907_070 Hb_001907_070 Hb_006911_070--Hb_001907_070 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_001959_240 Hb_001959_240 Hb_006911_070--Hb_001959_240 Hb_031042_060 Hb_031042_060 Hb_006911_070--Hb_031042_060 Hb_006911_070--Hb_000302_190 Hb_005618_150 Hb_005618_150 Hb_006911_070--Hb_005618_150 Hb_005063_080--Hb_005618_150 Hb_000665_270 Hb_000665_270 Hb_005063_080--Hb_000665_270 Hb_005063_080--Hb_001907_070 Hb_005063_080--Hb_006911_070 Hb_006198_130 Hb_006198_130 Hb_005063_080--Hb_006198_130 Hb_000336_200 Hb_000336_200 Hb_005063_080--Hb_000336_200 Hb_001579_200 Hb_001579_200 Hb_001411_050--Hb_001579_200 Hb_000359_220 Hb_000359_220 Hb_001411_050--Hb_000359_220 Hb_006916_030 Hb_006916_030 Hb_001411_050--Hb_006916_030 Hb_006846_080 Hb_006846_080 Hb_001411_050--Hb_006846_080 Hb_001411_050--Hb_004225_040 Hb_001411_050--Hb_001140_180 Hb_008092_050 Hb_008092_050 Hb_001408_030--Hb_008092_050 Hb_008092_060 Hb_008092_060 Hb_001408_030--Hb_008092_060 Hb_001437_120 Hb_001437_120 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7037 52.4637 91.0027 63.2159 71.2171 31.5224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.22105 7.61137 8.38982 24.3913 144.807

CAGE analysis