Hb_023771_020

Information

Type -
Description -
Location Contig23771: 13052-18138
Sequence    

Annotation

kegg
ID rcu:RCOM_0306980
description Ran GTPase binding protein, putative
nr
ID XP_012088012.1
description PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9T626
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0306980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24977: 13160-15138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023771_020 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Jatropha curcas]
2 Hb_001758_110 0.1399873114 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_002399_020 0.1467001159 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
4 Hb_000762_110 0.1565159603 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
5 Hb_006198_190 0.1612119251 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
6 Hb_000281_070 0.1624270642 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
7 Hb_078106_010 0.1672073514 - - seed maturation protein PM37 [Populus trichocarpa]
8 Hb_005914_210 0.1718330976 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
9 Hb_001250_020 0.1728391658 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
10 Hb_007192_090 0.1742828996 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
11 Hb_006351_060 0.1756180141 - - PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
12 Hb_021079_020 0.1766621277 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
13 Hb_012799_190 0.1818726089 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
14 Hb_002928_030 0.1827213591 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
15 Hb_003734_080 0.1831572333 - - myosin vIII, putative [Ricinus communis]
16 Hb_000212_370 0.1840663115 - - thioredoxin f-type, putative [Ricinus communis]
17 Hb_000031_230 0.184729831 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
18 Hb_006846_080 0.1874408762 - - calnexin, putative [Ricinus communis]
19 Hb_000976_130 0.1886237825 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
20 Hb_005618_150 0.1892293471 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_023771_020 Hb_023771_020 Hb_001758_110 Hb_001758_110 Hb_023771_020--Hb_001758_110 Hb_002399_020 Hb_002399_020 Hb_023771_020--Hb_002399_020 Hb_000762_110 Hb_000762_110 Hb_023771_020--Hb_000762_110 Hb_006198_190 Hb_006198_190 Hb_023771_020--Hb_006198_190 Hb_000281_070 Hb_000281_070 Hb_023771_020--Hb_000281_070 Hb_078106_010 Hb_078106_010 Hb_023771_020--Hb_078106_010 Hb_001758_110--Hb_006198_190 Hb_006351_060 Hb_006351_060 Hb_001758_110--Hb_006351_060 Hb_001758_110--Hb_000281_070 Hb_001758_110--Hb_078106_010 Hb_000976_130 Hb_000976_130 Hb_001758_110--Hb_000976_130 Hb_006846_080 Hb_006846_080 Hb_002399_020--Hb_006846_080 Hb_002399_020--Hb_000762_110 Hb_021409_190 Hb_021409_190 Hb_002399_020--Hb_021409_190 Hb_016760_010 Hb_016760_010 Hb_002399_020--Hb_016760_010 Hb_010757_030 Hb_010757_030 Hb_002399_020--Hb_010757_030 Hb_000120_860 Hb_000120_860 Hb_002399_020--Hb_000120_860 Hb_005914_210 Hb_005914_210 Hb_000762_110--Hb_005914_210 Hb_000376_210 Hb_000376_210 Hb_000762_110--Hb_000376_210 Hb_001250_020 Hb_001250_020 Hb_000762_110--Hb_001250_020 Hb_002928_030 Hb_002928_030 Hb_000762_110--Hb_002928_030 Hb_000762_110--Hb_000120_860 Hb_000579_040 Hb_000579_040 Hb_000762_110--Hb_000579_040 Hb_010620_050 Hb_010620_050 Hb_006198_190--Hb_010620_050 Hb_003847_040 Hb_003847_040 Hb_006198_190--Hb_003847_040 Hb_006916_050 Hb_006916_050 Hb_006198_190--Hb_006916_050 Hb_012506_020 Hb_012506_020 Hb_006198_190--Hb_012506_020 Hb_000069_360 Hb_000069_360 Hb_006198_190--Hb_000069_360 Hb_000224_220 Hb_000224_220 Hb_000281_070--Hb_000224_220 Hb_003470_070 Hb_003470_070 Hb_000281_070--Hb_003470_070 Hb_006911_070 Hb_006911_070 Hb_000281_070--Hb_006911_070 Hb_005063_080 Hb_005063_080 Hb_000281_070--Hb_005063_080 Hb_001411_050 Hb_001411_050 Hb_000281_070--Hb_001411_050 Hb_001408_030 Hb_001408_030 Hb_000281_070--Hb_001408_030 Hb_078106_010--Hb_001411_050 Hb_078106_010--Hb_006351_060 Hb_006629_020 Hb_006629_020 Hb_078106_010--Hb_006629_020 Hb_078106_010--Hb_000281_070 Hb_078106_010--Hb_006846_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09198 26.4669 28.1271 24.2878 24.3116 7.00269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73478 6.8558 10.3618 3.00945 75.3396

CAGE analysis