Hb_006629_020

Information

Type -
Description -
Location Contig6629: 20738-28081
Sequence    

Annotation

kegg
ID rcu:RCOM_1299860
description ferric-chelate reductase, putative (EC:1.6.3.1)
nr
ID ADR70888.1
description ferric reductase oxidase [Manihot esculenta]
swissprot
ID Q3KTM0
description Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1
trembl
ID V9HYY0
description Ferric reductase oxidase OS=Manihot esculenta GN=FRO3 PE=2 SV=1
Gene Ontology
ID GO:0016021
description ferric reduction oxidase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53088: 21073-27951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006629_020 0.0 - - ferric reductase oxidase [Manihot esculenta]
2 Hb_078106_010 0.1619233449 - - seed maturation protein PM37 [Populus trichocarpa]
3 Hb_167973_010 0.1809257292 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
4 Hb_005799_020 0.1824990944 - - PREDICTED: bidirectional sugar transporter SWEET6b [Jatropha curcas]
5 Hb_006573_010 0.1930767623 - - heat shock protein [Hevea brasiliensis]
6 Hb_000922_220 0.1942991944 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
7 Hb_004875_010 0.1970216221 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
8 Hb_021254_010 0.1994573324 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
9 Hb_004884_030 0.2016788679 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
10 Hb_000359_220 0.2027211945 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
11 Hb_000964_170 0.2042149682 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
12 Hb_000579_030 0.2073681809 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
13 Hb_000434_010 0.2084824418 - - PREDICTED: protein starmaker [Jatropha curcas]
14 Hb_000281_070 0.2119218617 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
15 Hb_006052_030 0.2131808902 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
16 Hb_119600_050 0.2140200048 - - sugar transporter, putative [Ricinus communis]
17 Hb_001766_040 0.2146583967 - - chaperone clpb, putative [Ricinus communis]
18 Hb_000031_230 0.2160992712 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
19 Hb_002942_130 0.2166200638 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
20 Hb_000251_050 0.2190641104 - - hypothetical protein JCGZ_21678 [Jatropha curcas]

Gene co-expression network

sample Hb_006629_020 Hb_006629_020 Hb_078106_010 Hb_078106_010 Hb_006629_020--Hb_078106_010 Hb_167973_010 Hb_167973_010 Hb_006629_020--Hb_167973_010 Hb_005799_020 Hb_005799_020 Hb_006629_020--Hb_005799_020 Hb_006573_010 Hb_006573_010 Hb_006629_020--Hb_006573_010 Hb_000922_220 Hb_000922_220 Hb_006629_020--Hb_000922_220 Hb_004875_010 Hb_004875_010 Hb_006629_020--Hb_004875_010 Hb_001411_050 Hb_001411_050 Hb_078106_010--Hb_001411_050 Hb_006351_060 Hb_006351_060 Hb_078106_010--Hb_006351_060 Hb_000281_070 Hb_000281_070 Hb_078106_010--Hb_000281_070 Hb_006846_080 Hb_006846_080 Hb_078106_010--Hb_006846_080 Hb_023771_020 Hb_023771_020 Hb_078106_010--Hb_023771_020 Hb_004884_030 Hb_004884_030 Hb_167973_010--Hb_004884_030 Hb_167973_010--Hb_004875_010 Hb_000964_170 Hb_000964_170 Hb_167973_010--Hb_000964_170 Hb_012353_040 Hb_012353_040 Hb_167973_010--Hb_012353_040 Hb_119600_050 Hb_119600_050 Hb_167973_010--Hb_119600_050 Hb_003632_030 Hb_003632_030 Hb_167973_010--Hb_003632_030 Hb_000261_400 Hb_000261_400 Hb_005799_020--Hb_000261_400 Hb_003053_050 Hb_003053_050 Hb_005799_020--Hb_003053_050 Hb_005799_020--Hb_000964_170 Hb_000031_230 Hb_000031_230 Hb_005799_020--Hb_000031_230 Hb_057796_010 Hb_057796_010 Hb_005799_020--Hb_057796_010 Hb_012753_040 Hb_012753_040 Hb_006573_010--Hb_012753_040 Hb_007257_010 Hb_007257_010 Hb_006573_010--Hb_007257_010 Hb_001766_040 Hb_001766_040 Hb_006573_010--Hb_001766_040 Hb_000302_300 Hb_000302_300 Hb_006573_010--Hb_000302_300 Hb_020247_050 Hb_020247_050 Hb_006573_010--Hb_020247_050 Hb_000991_050 Hb_000991_050 Hb_006573_010--Hb_000991_050 Hb_000922_220--Hb_004875_010 Hb_122273_020 Hb_122273_020 Hb_000922_220--Hb_122273_020 Hb_002804_030 Hb_002804_030 Hb_000922_220--Hb_002804_030 Hb_000434_010 Hb_000434_010 Hb_000922_220--Hb_000434_010 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_172421_010 Hb_172421_010 Hb_000922_220--Hb_172421_010 Hb_014720_030 Hb_014720_030 Hb_004875_010--Hb_014720_030 Hb_004875_010--Hb_122273_020 Hb_000649_270 Hb_000649_270 Hb_004875_010--Hb_000649_270 Hb_002005_030 Hb_002005_030 Hb_004875_010--Hb_002005_030 Hb_005772_030 Hb_005772_030 Hb_004875_010--Hb_005772_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3748 79.127 22.6474 67.1161 83.1328 41.8713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.36384 1.059 2.02443 23.8527 131.132

CAGE analysis