Hb_001766_040

Information

Type -
Description -
Location Contig1766: 36979-44993
Sequence    

Annotation

kegg
ID rcu:RCOM_0524340
description chaperone clpb, putative
nr
ID XP_002526076.1
description chaperone clpb, putative [Ricinus communis]
swissprot
ID Q9LF37
description Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana GN=CLPB3 PE=2 SV=1
trembl
ID B9SJA7
description Chaperone clpb, putative OS=Ricinus communis GN=RCOM_0524340 PE=3 SV=1
Gene Ontology
ID GO:0009570
description chaperone protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16912: 36970-40924 , PASA_asmbl_16913: 40925-41823 , PASA_asmbl_16914: 41824-43179 , PASA_asmbl_16916: 44518-44799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_040 0.0 - - chaperone clpb, putative [Ricinus communis]
2 Hb_000062_110 0.1370095742 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
3 Hb_001366_160 0.1394514976 - - -
4 Hb_006573_010 0.1653845485 - - heat shock protein [Hevea brasiliensis]
5 Hb_010407_190 0.1711046642 - - phosphate transporter [Manihot esculenta]
6 Hb_005962_010 0.1760121787 - - -
7 Hb_002368_070 0.1787910958 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
8 Hb_031658_040 0.1850651509 - - -
9 Hb_000329_100 0.1867850153 - - PREDICTED: uncharacterized protein LOC105643144 [Jatropha curcas]
10 Hb_002495_060 0.1878432939 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002636_110 0.1883516312 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
12 Hb_007257_010 0.1921719787 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
13 Hb_006618_040 0.1929580583 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
14 Hb_065408_010 0.1975985523 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
15 Hb_002942_130 0.1991539822 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
16 Hb_006052_030 0.2004647102 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
17 Hb_001232_100 0.2006580197 - - Heat shock 70 kDa protein, putative [Ricinus communis]
18 Hb_000334_170 0.2010047988 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
19 Hb_000264_230 0.203072046 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
20 Hb_000703_300 0.205215314 - - -

Gene co-expression network

sample Hb_001766_040 Hb_001766_040 Hb_000062_110 Hb_000062_110 Hb_001766_040--Hb_000062_110 Hb_001366_160 Hb_001366_160 Hb_001766_040--Hb_001366_160 Hb_006573_010 Hb_006573_010 Hb_001766_040--Hb_006573_010 Hb_010407_190 Hb_010407_190 Hb_001766_040--Hb_010407_190 Hb_005962_010 Hb_005962_010 Hb_001766_040--Hb_005962_010 Hb_002368_070 Hb_002368_070 Hb_001766_040--Hb_002368_070 Hb_000941_140 Hb_000941_140 Hb_000062_110--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_000062_110--Hb_006618_040 Hb_001369_370 Hb_001369_370 Hb_000062_110--Hb_001369_370 Hb_011344_020 Hb_011344_020 Hb_000062_110--Hb_011344_020 Hb_019516_030 Hb_019516_030 Hb_000062_110--Hb_019516_030 Hb_031658_040 Hb_031658_040 Hb_001366_160--Hb_031658_040 Hb_000139_150 Hb_000139_150 Hb_001366_160--Hb_000139_150 Hb_001366_160--Hb_002368_070 Hb_065408_010 Hb_065408_010 Hb_001366_160--Hb_065408_010 Hb_015026_080 Hb_015026_080 Hb_001366_160--Hb_015026_080 Hb_012753_040 Hb_012753_040 Hb_006573_010--Hb_012753_040 Hb_007257_010 Hb_007257_010 Hb_006573_010--Hb_007257_010 Hb_000302_300 Hb_000302_300 Hb_006573_010--Hb_000302_300 Hb_020247_050 Hb_020247_050 Hb_006573_010--Hb_020247_050 Hb_000991_050 Hb_000991_050 Hb_006573_010--Hb_000991_050 Hb_010407_190--Hb_007257_010 Hb_010407_190--Hb_000062_110 Hb_000329_100 Hb_000329_100 Hb_010407_190--Hb_000329_100 Hb_000031_170 Hb_000031_170 Hb_010407_190--Hb_000031_170 Hb_000011_210 Hb_000011_210 Hb_010407_190--Hb_000011_210 Hb_000078_170 Hb_000078_170 Hb_005962_010--Hb_000078_170 Hb_008556_020 Hb_008556_020 Hb_005962_010--Hb_008556_020 Hb_002311_230 Hb_002311_230 Hb_005962_010--Hb_002311_230 Hb_011639_150 Hb_011639_150 Hb_005962_010--Hb_011639_150 Hb_119886_040 Hb_119886_040 Hb_005962_010--Hb_119886_040 Hb_006618_050 Hb_006618_050 Hb_002368_070--Hb_006618_050 Hb_011931_060 Hb_011931_060 Hb_002368_070--Hb_011931_060 Hb_005250_030 Hb_005250_030 Hb_002368_070--Hb_005250_030 Hb_002636_110 Hb_002636_110 Hb_002368_070--Hb_002636_110 Hb_001623_280 Hb_001623_280 Hb_002368_070--Hb_001623_280 Hb_002368_070--Hb_031658_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2 89.0236 15.7287 18.0326 112.401 38.1487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0057 7.21536 15.0563 29.5445 144.855

CAGE analysis