Hb_000139_150

Information

Type -
Description -
Location Contig139: 176068-178722
Sequence    

Annotation

kegg
ID atr:s00047p00084220
description AMTR_s00047p00084220; hypothetical protein
nr
ID ABA94124.1
description transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID Q2R3A0
description Transposon protein, putative, Mutator sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g32660 PE=4 SV=1
Gene Ontology
ID GO:0008270
description transposon mutator sub-class

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_150 0.0 - - transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]
2 Hb_001366_160 0.153981104 - - -
3 Hb_001009_100 0.1711642345 - - -
4 Hb_031658_040 0.180059863 - - -
5 Hb_065408_010 0.1948281211 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
6 Hb_003388_030 0.1968635153 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
7 Hb_004884_020 0.2037607231 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
8 Hb_000552_100 0.2039365554 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
9 Hb_000384_080 0.2044658094 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
10 Hb_015026_080 0.2052939347 - - -
11 Hb_002368_070 0.2069274566 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
12 Hb_119600_050 0.2084055491 - - sugar transporter, putative [Ricinus communis]
13 Hb_011931_060 0.2092673113 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
14 Hb_002636_110 0.2096466667 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
15 Hb_011616_020 0.21037147 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
16 Hb_001766_040 0.214369987 - - chaperone clpb, putative [Ricinus communis]
17 Hb_000345_330 0.2145722488 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
18 Hb_007313_100 0.2157509438 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
19 Hb_008123_010 0.2190670146 - - -
20 Hb_156279_010 0.2197048971 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_150 Hb_000139_150 Hb_001366_160 Hb_001366_160 Hb_000139_150--Hb_001366_160 Hb_001009_100 Hb_001009_100 Hb_000139_150--Hb_001009_100 Hb_031658_040 Hb_031658_040 Hb_000139_150--Hb_031658_040 Hb_065408_010 Hb_065408_010 Hb_000139_150--Hb_065408_010 Hb_003388_030 Hb_003388_030 Hb_000139_150--Hb_003388_030 Hb_004884_020 Hb_004884_020 Hb_000139_150--Hb_004884_020 Hb_001366_160--Hb_031658_040 Hb_001766_040 Hb_001766_040 Hb_001366_160--Hb_001766_040 Hb_002368_070 Hb_002368_070 Hb_001366_160--Hb_002368_070 Hb_001366_160--Hb_065408_010 Hb_015026_080 Hb_015026_080 Hb_001366_160--Hb_015026_080 Hb_001009_100--Hb_003388_030 Hb_001009_100--Hb_004884_020 Hb_004987_070 Hb_004987_070 Hb_001009_100--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_001009_100--Hb_000300_120 Hb_000069_320 Hb_000069_320 Hb_001009_100--Hb_000069_320 Hb_067776_020 Hb_067776_020 Hb_001009_100--Hb_067776_020 Hb_006618_050 Hb_006618_050 Hb_031658_040--Hb_006618_050 Hb_031658_040--Hb_002368_070 Hb_031658_040--Hb_065408_010 Hb_003506_050 Hb_003506_050 Hb_031658_040--Hb_003506_050 Hb_031658_040--Hb_015026_080 Hb_007120_060 Hb_007120_060 Hb_065408_010--Hb_007120_060 Hb_005211_020 Hb_005211_020 Hb_065408_010--Hb_005211_020 Hb_002636_110 Hb_002636_110 Hb_065408_010--Hb_002636_110 Hb_001726_100 Hb_001726_100 Hb_065408_010--Hb_001726_100 Hb_000925_090 Hb_000925_090 Hb_065408_010--Hb_000925_090 Hb_001085_030 Hb_001085_030 Hb_065408_010--Hb_001085_030 Hb_003388_030--Hb_067776_020 Hb_000384_080 Hb_000384_080 Hb_003388_030--Hb_000384_080 Hb_003388_030--Hb_004987_070 Hb_003388_030--Hb_000300_120 Hb_005470_020 Hb_005470_020 Hb_003388_030--Hb_005470_020 Hb_004884_020--Hb_003388_030 Hb_003058_020 Hb_003058_020 Hb_004884_020--Hb_003058_020 Hb_004884_020--Hb_004987_070 Hb_004884_020--Hb_000384_080 Hb_001117_160 Hb_001117_160 Hb_004884_020--Hb_001117_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198041 0.347305 0.0608548 0.196015 0.518763 0.375358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.154915 0.0812571 0 0.404596 0.81259

CAGE analysis