Hb_015026_080

Information

Type -
Description -
Location Contig15026: 49574-54596
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12599: 53199-53461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_080 0.0 - - -
2 Hb_001832_040 0.1092103562 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002518_120 0.1164450938 - - hypothetical protein RCOM_0731250 [Ricinus communis]
4 Hb_000087_140 0.1315441061 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
5 Hb_005250_030 0.1351254753 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
6 Hb_000349_240 0.1355377317 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
7 Hb_031658_040 0.1364314356 - - -
8 Hb_000648_040 0.1392746294 - - unknown [Populus trichocarpa]
9 Hb_000130_260 0.1437347221 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
10 Hb_156279_010 0.1440973591 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
11 Hb_000069_490 0.1447079484 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009252_040 0.144804215 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
13 Hb_030131_030 0.1448464558 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
14 Hb_011931_060 0.1451252057 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
15 Hb_000130_320 0.1464099399 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
16 Hb_002368_070 0.1467739228 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
17 Hb_001790_080 0.1476100932 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
18 Hb_000110_270 0.1502130119 - - prp4, putative [Ricinus communis]
19 Hb_032258_010 0.1507877772 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
20 Hb_002631_250 0.1535929213 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]

Gene co-expression network

sample Hb_015026_080 Hb_015026_080 Hb_001832_040 Hb_001832_040 Hb_015026_080--Hb_001832_040 Hb_002518_120 Hb_002518_120 Hb_015026_080--Hb_002518_120 Hb_000087_140 Hb_000087_140 Hb_015026_080--Hb_000087_140 Hb_005250_030 Hb_005250_030 Hb_015026_080--Hb_005250_030 Hb_000349_240 Hb_000349_240 Hb_015026_080--Hb_000349_240 Hb_031658_040 Hb_031658_040 Hb_015026_080--Hb_031658_040 Hb_000069_490 Hb_000069_490 Hb_001832_040--Hb_000069_490 Hb_001832_040--Hb_000349_240 Hb_002973_110 Hb_002973_110 Hb_001832_040--Hb_002973_110 Hb_001790_080 Hb_001790_080 Hb_001832_040--Hb_001790_080 Hb_143629_140 Hb_143629_140 Hb_001832_040--Hb_143629_140 Hb_000010_290 Hb_000010_290 Hb_002518_120--Hb_000010_290 Hb_032258_010 Hb_032258_010 Hb_002518_120--Hb_032258_010 Hb_002282_070 Hb_002282_070 Hb_002518_120--Hb_002282_070 Hb_003475_020 Hb_003475_020 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030 Hb_000087_140--Hb_001790_080 Hb_036790_080 Hb_036790_080 Hb_000087_140--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_000087_140--Hb_000130_320 Hb_000087_140--Hb_000349_240 Hb_001435_030 Hb_001435_030 Hb_000087_140--Hb_001435_030 Hb_003952_060 Hb_003952_060 Hb_000087_140--Hb_003952_060 Hb_007545_130 Hb_007545_130 Hb_005250_030--Hb_007545_130 Hb_000815_170 Hb_000815_170 Hb_005250_030--Hb_000815_170 Hb_013459_010 Hb_013459_010 Hb_005250_030--Hb_013459_010 Hb_006618_050 Hb_006618_050 Hb_005250_030--Hb_006618_050 Hb_156279_010 Hb_156279_010 Hb_005250_030--Hb_156279_010 Hb_003506_050 Hb_003506_050 Hb_005250_030--Hb_003506_050 Hb_000349_240--Hb_001790_080 Hb_018118_010 Hb_018118_010 Hb_000349_240--Hb_018118_010 Hb_009252_040 Hb_009252_040 Hb_000349_240--Hb_009252_040 Hb_000033_110 Hb_000033_110 Hb_000349_240--Hb_000033_110 Hb_000007_010 Hb_000007_010 Hb_000349_240--Hb_000007_010 Hb_031658_040--Hb_006618_050 Hb_002368_070 Hb_002368_070 Hb_031658_040--Hb_002368_070 Hb_065408_010 Hb_065408_010 Hb_031658_040--Hb_065408_010 Hb_031658_040--Hb_003506_050 Hb_001366_160 Hb_001366_160 Hb_031658_040--Hb_001366_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91234 2.50542 1.75474 1.06095 2.87316 3.34944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99878 1.94847 0.673566 2.86317 10.453

CAGE analysis