Hb_001832_040

Information

Type -
Description -
Location Contig1832: 25470-29889
Sequence    

Annotation

kegg
ID rcu:RCOM_1047020
description hypothetical protein
nr
ID XP_002514120.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6YYA3
description Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1
trembl
ID B9RK76
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1047020 PE=4 SV=1
Gene Ontology
ID GO:0003723
description crs1 domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17883: 26119-26669 , PASA_asmbl_17884: 28453-29293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_015026_080 0.1092103562 - - -
3 Hb_000069_490 0.1107108899 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000349_240 0.1112113728 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
5 Hb_002973_110 0.1116782926 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_001790_080 0.1170173366 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
7 Hb_143629_140 0.1196358706 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_007192_090 0.1206180056 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
9 Hb_015778_060 0.1212244467 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
10 Hb_000997_140 0.1220068765 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
11 Hb_030131_030 0.1228685256 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
12 Hb_002631_250 0.1255176892 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
13 Hb_001472_160 0.1268517577 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_007545_130 0.1281543967 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_004108_060 0.1286220885 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
16 Hb_002282_070 0.130577864 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
17 Hb_000345_370 0.1307947409 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
18 Hb_000648_040 0.1323908839 - - unknown [Populus trichocarpa]
19 Hb_025477_050 0.1334216138 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_007769_040 0.1337518191 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_001832_040 Hb_001832_040 Hb_015026_080 Hb_015026_080 Hb_001832_040--Hb_015026_080 Hb_000069_490 Hb_000069_490 Hb_001832_040--Hb_000069_490 Hb_000349_240 Hb_000349_240 Hb_001832_040--Hb_000349_240 Hb_002973_110 Hb_002973_110 Hb_001832_040--Hb_002973_110 Hb_001790_080 Hb_001790_080 Hb_001832_040--Hb_001790_080 Hb_143629_140 Hb_143629_140 Hb_001832_040--Hb_143629_140 Hb_002518_120 Hb_002518_120 Hb_015026_080--Hb_002518_120 Hb_000087_140 Hb_000087_140 Hb_015026_080--Hb_000087_140 Hb_005250_030 Hb_005250_030 Hb_015026_080--Hb_005250_030 Hb_015026_080--Hb_000349_240 Hb_031658_040 Hb_031658_040 Hb_015026_080--Hb_031658_040 Hb_003878_080 Hb_003878_080 Hb_000069_490--Hb_003878_080 Hb_024714_080 Hb_024714_080 Hb_000069_490--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_000069_490--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000069_490--Hb_003077_130 Hb_010757_030 Hb_010757_030 Hb_000069_490--Hb_010757_030 Hb_000997_140 Hb_000997_140 Hb_000069_490--Hb_000997_140 Hb_000349_240--Hb_001790_080 Hb_018118_010 Hb_018118_010 Hb_000349_240--Hb_018118_010 Hb_009252_040 Hb_009252_040 Hb_000349_240--Hb_009252_040 Hb_000349_240--Hb_000087_140 Hb_000033_110 Hb_000033_110 Hb_000349_240--Hb_000033_110 Hb_000007_010 Hb_000007_010 Hb_000349_240--Hb_000007_010 Hb_013459_020 Hb_013459_020 Hb_002973_110--Hb_013459_020 Hb_005211_020 Hb_005211_020 Hb_002973_110--Hb_005211_020 Hb_013749_050 Hb_013749_050 Hb_002973_110--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_002973_110--Hb_007012_030 Hb_001472_160 Hb_001472_160 Hb_002973_110--Hb_001472_160 Hb_002600_070 Hb_002600_070 Hb_002973_110--Hb_002600_070 Hb_000130_320 Hb_000130_320 Hb_001790_080--Hb_000130_320 Hb_029584_070 Hb_029584_070 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001936_090 Hb_001936_090 Hb_001790_080--Hb_001936_090 Hb_004108_060 Hb_004108_060 Hb_143629_140--Hb_004108_060 Hb_143629_140--Hb_001472_160 Hb_143629_140--Hb_000349_240 Hb_007192_090 Hb_007192_090 Hb_143629_140--Hb_007192_090 Hb_143629_140--Hb_005211_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31578 2.63063 2.24821 0.885748 1.36273 1.9021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11693 1.36848 0.702616 1.80017 7.45702

CAGE analysis