Hb_002518_120

Information

Type -
Description -
Location Contig2518: 127515-131880
Sequence    

Annotation

kegg
ID rcu:RCOM_0731250
description hypothetical protein
nr
ID XP_002520450.1
description hypothetical protein RCOM_0731250 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S381
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26279: 129378-129785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_120 0.0 - - hypothetical protein RCOM_0731250 [Ricinus communis]
2 Hb_000010_290 0.0991803864 - - -
3 Hb_032258_010 0.1157233288 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
4 Hb_015026_080 0.1164450938 - - -
5 Hb_002282_070 0.1255538341 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
6 Hb_003475_020 0.1263265683 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
7 Hb_030131_030 0.1276231258 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
8 Hb_001427_040 0.1285086152 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
9 Hb_000676_200 0.1298097865 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
10 Hb_001595_080 0.1312761525 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007894_220 0.1332421911 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
12 Hb_000012_160 0.1358034953 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
13 Hb_000069_490 0.1367467026 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003994_110 0.1370013547 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
15 Hb_003544_010 0.1379927233 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_005282_020 0.1412543255 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
17 Hb_011616_020 0.1433865784 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
18 Hb_000087_140 0.1435034365 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
19 Hb_000613_110 0.1449535294 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
20 Hb_000648_040 0.144953761 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_002518_120 Hb_002518_120 Hb_000010_290 Hb_000010_290 Hb_002518_120--Hb_000010_290 Hb_032258_010 Hb_032258_010 Hb_002518_120--Hb_032258_010 Hb_015026_080 Hb_015026_080 Hb_002518_120--Hb_015026_080 Hb_002282_070 Hb_002282_070 Hb_002518_120--Hb_002282_070 Hb_003475_020 Hb_003475_020 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030 Hb_000676_200 Hb_000676_200 Hb_000010_290--Hb_000676_200 Hb_001824_090 Hb_001824_090 Hb_000010_290--Hb_001824_090 Hb_003544_010 Hb_003544_010 Hb_000010_290--Hb_003544_010 Hb_000010_290--Hb_003475_020 Hb_003994_110 Hb_003994_110 Hb_000010_290--Hb_003994_110 Hb_001427_040 Hb_001427_040 Hb_032258_010--Hb_001427_040 Hb_032258_010--Hb_002282_070 Hb_000220_210 Hb_000220_210 Hb_032258_010--Hb_000220_210 Hb_002542_160 Hb_002542_160 Hb_032258_010--Hb_002542_160 Hb_155832_010 Hb_155832_010 Hb_032258_010--Hb_155832_010 Hb_001832_040 Hb_001832_040 Hb_015026_080--Hb_001832_040 Hb_000087_140 Hb_000087_140 Hb_015026_080--Hb_000087_140 Hb_005250_030 Hb_005250_030 Hb_015026_080--Hb_005250_030 Hb_000349_240 Hb_000349_240 Hb_015026_080--Hb_000349_240 Hb_031658_040 Hb_031658_040 Hb_015026_080--Hb_031658_040 Hb_002282_070--Hb_001427_040 Hb_016461_030 Hb_016461_030 Hb_002282_070--Hb_016461_030 Hb_000345_370 Hb_000345_370 Hb_002282_070--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060 Hb_003475_020--Hb_003994_110 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_003475_020--Hb_000676_200 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_003475_020--Hb_002282_070 Hb_002631_250 Hb_002631_250 Hb_030131_030--Hb_002631_250 Hb_030131_030--Hb_000676_200 Hb_002374_250 Hb_002374_250 Hb_030131_030--Hb_002374_250 Hb_008511_140 Hb_008511_140 Hb_030131_030--Hb_008511_140 Hb_000069_490 Hb_000069_490 Hb_030131_030--Hb_000069_490 Hb_003089_020 Hb_003089_020 Hb_030131_030--Hb_003089_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408899 0.312449 0.494773 0.449757 0.759397 0.714899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.603869 0.56163 0.381618 0.975398 3.22123

CAGE analysis