Hb_000011_210

Information

Type -
Description -
Location Contig11: 283112-286282
Sequence    

Annotation

kegg
ID rcu:RCOM_0995410
description FACT complex subunit SPT16, putative
nr
ID XP_012068781.1
description PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
swissprot
ID O82491
description FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1
trembl
ID A0A067KWM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24615 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02981: 282876-283062 , PASA_asmbl_02982: 283133-283957 , PASA_asmbl_02983: 286202-286385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_210 0.0 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
2 Hb_001417_050 0.0885834446 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
3 Hb_000935_090 0.0906721151 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
4 Hb_015475_020 0.0946911209 - - importin beta-1, putative [Ricinus communis]
5 Hb_133047_010 0.095567923 - - xanthine dehydrogenase, putative [Ricinus communis]
6 Hb_010315_090 0.0983215595 - - suppressor of ty, putative [Ricinus communis]
7 Hb_000025_650 0.0983454611 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
8 Hb_111985_080 0.0990714402 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
9 Hb_030627_060 0.1010021914 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
10 Hb_000504_150 0.1022609968 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
11 Hb_001493_040 0.1024640664 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
12 Hb_003858_090 0.1029020171 - - Filamin-A-interacting protein, putative [Ricinus communis]
13 Hb_004429_160 0.1033264238 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
14 Hb_000347_570 0.1043809294 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
15 Hb_011344_020 0.1046608838 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
16 Hb_004543_030 0.1057659086 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
17 Hb_000062_470 0.1061484809 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
18 Hb_004453_110 0.1062373378 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
19 Hb_064903_010 0.1068083509 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
20 Hb_004884_010 0.1073201023 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000011_210 Hb_000011_210 Hb_001417_050 Hb_001417_050 Hb_000011_210--Hb_001417_050 Hb_000935_090 Hb_000935_090 Hb_000011_210--Hb_000935_090 Hb_015475_020 Hb_015475_020 Hb_000011_210--Hb_015475_020 Hb_133047_010 Hb_133047_010 Hb_000011_210--Hb_133047_010 Hb_010315_090 Hb_010315_090 Hb_000011_210--Hb_010315_090 Hb_000025_650 Hb_000025_650 Hb_000011_210--Hb_000025_650 Hb_001493_040 Hb_001493_040 Hb_001417_050--Hb_001493_040 Hb_000160_290 Hb_000160_290 Hb_001417_050--Hb_000160_290 Hb_001417_050--Hb_010315_090 Hb_002422_050 Hb_002422_050 Hb_001417_050--Hb_002422_050 Hb_006252_020 Hb_006252_020 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190 Hb_001178_150 Hb_001178_150 Hb_000935_090--Hb_001178_150 Hb_000935_090--Hb_001493_040 Hb_000935_090--Hb_001417_050 Hb_000935_090--Hb_000796_190 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_001221_160 Hb_001221_160 Hb_015475_020--Hb_001221_160 Hb_002349_050 Hb_002349_050 Hb_015475_020--Hb_002349_050 Hb_003858_090 Hb_003858_090 Hb_015475_020--Hb_003858_090 Hb_015475_020--Hb_133047_010 Hb_001080_270 Hb_001080_270 Hb_015475_020--Hb_001080_270 Hb_000753_100 Hb_000753_100 Hb_015475_020--Hb_000753_100 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_133047_010--Hb_148909_030 Hb_000329_130 Hb_000329_130 Hb_010315_090--Hb_000329_130 Hb_010315_090--Hb_001493_040 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_010315_090--Hb_004884_010 Hb_140049_020 Hb_140049_020 Hb_010315_090--Hb_140049_020 Hb_000347_570 Hb_000347_570 Hb_000025_650--Hb_000347_570 Hb_000025_650--Hb_001178_150 Hb_017895_020 Hb_017895_020 Hb_000025_650--Hb_017895_020 Hb_000031_290 Hb_000031_290 Hb_000025_650--Hb_000031_290 Hb_000025_650--Hb_004429_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.95878 12.5409 4.00153 5.07238 17.5532 12.4565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.77499 2.73476 3.38077 5.73761 10.3935

CAGE analysis