Hb_000302_300

Information

Type -
Description -
Location Contig302: 198422-204923
Sequence    

Annotation

kegg
ID cmo:103484110
description heat shock protein 83
nr
ID XP_011046024.1
description PREDICTED: heat shock protein 83 [Populus euphratica]
swissprot
ID P51819
description Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1
trembl
ID A0A0A0L6P6
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183950 PE=3 SV=1
Gene Ontology
ID GO:0005524
description heat shock protein 83

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31810: 198458-201722 , PASA_asmbl_31811: 199245-201755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_300 0.0 - - PREDICTED: heat shock protein 83 [Populus euphratica]
2 Hb_002843_220 0.1581626795 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
3 Hb_021254_010 0.1665370726 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
4 Hb_006573_010 0.1684923923 - - heat shock protein [Hevea brasiliensis]
5 Hb_020247_050 0.1721327274 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
6 Hb_000631_140 0.1737196068 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
7 Hb_000991_050 0.1874868355 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
8 Hb_000796_050 0.1891546723 - - galactinol synthase [Manihot esculenta]
9 Hb_012753_040 0.1909080589 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
10 Hb_004296_010 0.1932978788 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
11 Hb_004648_070 0.1948634324 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_020094_020 0.1977611606 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
13 Hb_000015_160 0.2000531101 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
14 Hb_006721_070 0.2048802803 - - PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Jatropha curcas]
15 Hb_009674_080 0.225187362 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
16 Hb_007257_010 0.2257578454 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
17 Hb_001514_060 0.2280965993 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
18 Hb_006618_040 0.2298094943 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
19 Hb_000540_010 0.2309897043 - - PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
20 Hb_006745_010 0.2329385321 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]

Gene co-expression network

sample Hb_000302_300 Hb_000302_300 Hb_002843_220 Hb_002843_220 Hb_000302_300--Hb_002843_220 Hb_021254_010 Hb_021254_010 Hb_000302_300--Hb_021254_010 Hb_006573_010 Hb_006573_010 Hb_000302_300--Hb_006573_010 Hb_020247_050 Hb_020247_050 Hb_000302_300--Hb_020247_050 Hb_000631_140 Hb_000631_140 Hb_000302_300--Hb_000631_140 Hb_000991_050 Hb_000991_050 Hb_000302_300--Hb_000991_050 Hb_020094_020 Hb_020094_020 Hb_002843_220--Hb_020094_020 Hb_002843_220--Hb_020247_050 Hb_000796_050 Hb_000796_050 Hb_002843_220--Hb_000796_050 Hb_006721_070 Hb_006721_070 Hb_002843_220--Hb_006721_070 Hb_002843_220--Hb_006573_010 Hb_021254_010--Hb_000631_140 Hb_021254_010--Hb_006721_070 Hb_006629_020 Hb_006629_020 Hb_021254_010--Hb_006629_020 Hb_078106_010 Hb_078106_010 Hb_021254_010--Hb_078106_010 Hb_021254_010--Hb_006573_010 Hb_012753_040 Hb_012753_040 Hb_006573_010--Hb_012753_040 Hb_007257_010 Hb_007257_010 Hb_006573_010--Hb_007257_010 Hb_001766_040 Hb_001766_040 Hb_006573_010--Hb_001766_040 Hb_006573_010--Hb_020247_050 Hb_006573_010--Hb_000991_050 Hb_020247_050--Hb_007257_010 Hb_020247_050--Hb_000796_050 Hb_020247_050--Hb_012753_040 Hb_000015_160 Hb_000015_160 Hb_000631_140--Hb_000015_160 Hb_000631_140--Hb_012753_040 Hb_002804_030 Hb_002804_030 Hb_000631_140--Hb_002804_030 Hb_010921_020 Hb_010921_020 Hb_000631_140--Hb_010921_020 Hb_000631_140--Hb_000991_050 Hb_000991_050--Hb_000015_160 Hb_000991_050--Hb_012753_040 Hb_002774_150 Hb_002774_150 Hb_000991_050--Hb_002774_150 Hb_009674_080 Hb_009674_080 Hb_000991_050--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_000991_050--Hb_004324_060 Hb_000139_180 Hb_000139_180 Hb_000991_050--Hb_000139_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.2343 775.321 86.903 216.752 643.449 99.3036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0039 11.5284 43.5732 52.955 337.338

CAGE analysis