Hb_001369_370

Information

Type -
Description -
Location Contig1369: 336354-337294
Sequence    

Annotation

kegg
ID tcc:TCM_014924
description Mitochondrion-localized small heat shock protein 23.6, putative isoform 1
nr
ID XP_012090444.1
description PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
swissprot
ID Q9FGM9
description 23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1
trembl
ID A0A067JSA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26255 PE=3 SV=1
Gene Ontology
ID GO:0005739
description kda heat shock mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10170: 336286-337711
cDNA
(Sanger)
(ID:Location)		 012_F19.ab1: 336286-337361 , 012_I11.ab1: 336292-337420 , 023_C03.ab1: 336272-337212 , 024_G22.ab1: 336291-337216 , 030_G05.ab1: 336287-337380 , 032_J24.ab1: 336292-337384 , 038_O22.ab1: 336292-337404 , 041_J10.ab1: 336285-337371

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_370 0.0 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
2 Hb_019516_030 0.1280343327 - - Calcyclin-binding protein, putative [Ricinus communis]
3 Hb_000062_110 0.1434847633 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
4 Hb_011004_020 0.1539219989 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
5 Hb_000941_140 0.1876319297 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
6 Hb_001235_100 0.1918274143 - - heat-shock protein, putative [Ricinus communis]
7 Hb_000454_190 0.2007728622 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
8 Hb_004635_080 0.2028794512 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_000883_030 0.2029636247 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
10 Hb_010020_010 0.2170718125 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
11 Hb_010407_190 0.2201104294 - - phosphate transporter [Manihot esculenta]
12 Hb_002233_100 0.2204110272 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
13 Hb_028227_030 0.2205416784 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
14 Hb_006052_030 0.2225001132 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
15 Hb_000215_220 0.2245892746 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
16 Hb_011344_020 0.224736996 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
17 Hb_020094_020 0.2258498433 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
18 Hb_022250_170 0.2268995529 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Populus euphratica]
19 Hb_006618_040 0.2271073801 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
20 Hb_000958_070 0.2286719607 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]

Gene co-expression network

sample Hb_001369_370 Hb_001369_370 Hb_019516_030 Hb_019516_030 Hb_001369_370--Hb_019516_030 Hb_000062_110 Hb_000062_110 Hb_001369_370--Hb_000062_110 Hb_011004_020 Hb_011004_020 Hb_001369_370--Hb_011004_020 Hb_000941_140 Hb_000941_140 Hb_001369_370--Hb_000941_140 Hb_001235_100 Hb_001235_100 Hb_001369_370--Hb_001235_100 Hb_000454_190 Hb_000454_190 Hb_001369_370--Hb_000454_190 Hb_019516_030--Hb_000454_190 Hb_019516_030--Hb_000062_110 Hb_019516_030--Hb_000941_140 Hb_019516_030--Hb_011004_020 Hb_004635_080 Hb_004635_080 Hb_019516_030--Hb_004635_080 Hb_001766_040 Hb_001766_040 Hb_000062_110--Hb_001766_040 Hb_000062_110--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_000062_110--Hb_006618_040 Hb_011344_020 Hb_011344_020 Hb_000062_110--Hb_011344_020 Hb_001322_170 Hb_001322_170 Hb_011004_020--Hb_001322_170 Hb_000028_040 Hb_000028_040 Hb_011004_020--Hb_000028_040 Hb_003656_110 Hb_003656_110 Hb_011004_020--Hb_003656_110 Hb_000883_030 Hb_000883_030 Hb_011004_020--Hb_000883_030 Hb_004296_010 Hb_004296_010 Hb_000941_140--Hb_004296_010 Hb_000941_140--Hb_006618_040 Hb_000941_140--Hb_000454_190 Hb_001232_100 Hb_001232_100 Hb_000941_140--Hb_001232_100 Hb_020094_020 Hb_020094_020 Hb_001235_100--Hb_020094_020 Hb_001235_100--Hb_000062_110 Hb_000483_180 Hb_000483_180 Hb_001235_100--Hb_000483_180 Hb_005962_010 Hb_005962_010 Hb_001235_100--Hb_005962_010 Hb_000488_010 Hb_000488_010 Hb_001235_100--Hb_000488_010 Hb_005527_030 Hb_005527_030 Hb_000454_190--Hb_005527_030 Hb_000958_070 Hb_000958_070 Hb_000454_190--Hb_000958_070 Hb_000454_190--Hb_011344_020 Hb_000343_110 Hb_000343_110 Hb_000454_190--Hb_000343_110 Hb_000982_050 Hb_000982_050 Hb_000454_190--Hb_000982_050 Hb_006445_010 Hb_006445_010 Hb_000454_190--Hb_006445_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
274.333 481.627 191.367 209.609 1483.69 400.242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
163.246 371.579 352.552 56.8101 996.417

CAGE analysis