Hb_001235_100

Information

Type -
Description -
Location Contig1235: 152587-156137
Sequence    

Annotation

kegg
ID rcu:RCOM_1061160
description heat-shock protein, putative
nr
ID XP_002528930.1
description heat-shock protein, putative [Ricinus communis]
swissprot
ID P11890
description Small heat shock protein, chloroplastic OS=Oxybasis rubra GN=HSP23 PE=2 SV=1
trembl
ID B9SSG1
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_1061160 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07153: 152897-153434 , PASA_asmbl_07154: 155078-156096 , PASA_asmbl_07156: 156740-166793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_100 0.0 - - heat-shock protein, putative [Ricinus communis]
2 Hb_020094_020 0.1428813767 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
3 Hb_000062_110 0.1882937319 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
4 Hb_001369_370 0.1918274143 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
5 Hb_000483_180 0.1990050984 - - -
6 Hb_005962_010 0.2059027158 - - -
7 Hb_000488_010 0.2082955122 - - 18.1 kDa class I heat shock protein [Jatropha curcas]
8 Hb_001766_040 0.2161207145 - - chaperone clpb, putative [Ricinus communis]
9 Hb_000941_140 0.2274923711 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
10 Hb_010020_010 0.2278638746 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
11 Hb_119886_040 0.2287246815 - - -
12 Hb_148392_010 0.2294454032 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_010407_190 0.2297603016 - - phosphate transporter [Manihot esculenta]
14 Hb_007257_010 0.2342992811 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
15 Hb_011639_150 0.2351391252 - - -
16 Hb_008556_020 0.2377682071 - - -
17 Hb_006618_040 0.2385979416 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
18 Hb_002843_220 0.2401773515 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
19 Hb_002311_230 0.2434858011 - - -
20 Hb_004296_010 0.2450198208 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001235_100 Hb_001235_100 Hb_020094_020 Hb_020094_020 Hb_001235_100--Hb_020094_020 Hb_000062_110 Hb_000062_110 Hb_001235_100--Hb_000062_110 Hb_001369_370 Hb_001369_370 Hb_001235_100--Hb_001369_370 Hb_000483_180 Hb_000483_180 Hb_001235_100--Hb_000483_180 Hb_005962_010 Hb_005962_010 Hb_001235_100--Hb_005962_010 Hb_000488_010 Hb_000488_010 Hb_001235_100--Hb_000488_010 Hb_010020_010 Hb_010020_010 Hb_020094_020--Hb_010020_010 Hb_002843_220 Hb_002843_220 Hb_020094_020--Hb_002843_220 Hb_020094_020--Hb_000062_110 Hb_004296_010 Hb_004296_010 Hb_020094_020--Hb_004296_010 Hb_000302_300 Hb_000302_300 Hb_020094_020--Hb_000302_300 Hb_001766_040 Hb_001766_040 Hb_000062_110--Hb_001766_040 Hb_000941_140 Hb_000941_140 Hb_000062_110--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_000062_110--Hb_006618_040 Hb_000062_110--Hb_001369_370 Hb_011344_020 Hb_011344_020 Hb_000062_110--Hb_011344_020 Hb_019516_030 Hb_019516_030 Hb_000062_110--Hb_019516_030 Hb_001369_370--Hb_019516_030 Hb_011004_020 Hb_011004_020 Hb_001369_370--Hb_011004_020 Hb_001369_370--Hb_000941_140 Hb_000454_190 Hb_000454_190 Hb_001369_370--Hb_000454_190 Hb_119886_040 Hb_119886_040 Hb_000483_180--Hb_119886_040 Hb_009558_040 Hb_009558_040 Hb_000483_180--Hb_009558_040 Hb_000483_180--Hb_000488_010 Hb_002311_230 Hb_002311_230 Hb_000483_180--Hb_002311_230 Hb_000024_070 Hb_000024_070 Hb_000483_180--Hb_000024_070 Hb_000181_360 Hb_000181_360 Hb_000483_180--Hb_000181_360 Hb_000078_170 Hb_000078_170 Hb_005962_010--Hb_000078_170 Hb_008556_020 Hb_008556_020 Hb_005962_010--Hb_008556_020 Hb_005962_010--Hb_002311_230 Hb_011639_150 Hb_011639_150 Hb_005962_010--Hb_011639_150 Hb_005962_010--Hb_001766_040 Hb_005962_010--Hb_119886_040 Hb_026198_040 Hb_026198_040 Hb_000488_010--Hb_026198_040 Hb_029223_050 Hb_029223_050 Hb_000488_010--Hb_029223_050 Hb_030827_060 Hb_030827_060 Hb_000488_010--Hb_030827_060 Hb_000538_010 Hb_000538_010 Hb_000488_010--Hb_000538_010 Hb_000422_110 Hb_000422_110 Hb_000488_010--Hb_000422_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6499 70.3817 7.33753 3.72663 128.012 30.1667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8574 18.0558 7.67916 5.67861 62.5777

CAGE analysis