Hb_005962_010

Information

Type -
Description -
Location Contig5962: 1244-7433
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005962_010 0.0 - - -
2 Hb_000078_170 0.1149654411 - - -
3 Hb_008556_020 0.1334893532 - - -
4 Hb_002311_230 0.149546504 - - -
5 Hb_011639_150 0.1564857639 - - -
6 Hb_001766_040 0.1760121787 - - chaperone clpb, putative [Ricinus communis]
7 Hb_119886_040 0.1814059527 - - -
8 Hb_000483_180 0.1843717012 - - -
9 Hb_000062_110 0.199672412 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
10 Hb_001235_100 0.2059027158 - - heat-shock protein, putative [Ricinus communis]
11 Hb_000330_080 0.208748858 - - auxilin, putative [Ricinus communis]
12 Hb_004254_110 0.2102989701 - - -
13 Hb_000941_140 0.2179355219 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
14 Hb_000105_020 0.2207614819 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
15 Hb_006618_040 0.2208460885 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
16 Hb_004884_020 0.2244958965 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
17 Hb_000011_210 0.2249859554 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
18 Hb_000513_070 0.2254762057 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
19 Hb_000703_300 0.2257547027 - - -
20 Hb_002814_120 0.2277039992 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]

Gene co-expression network

sample Hb_005962_010 Hb_005962_010 Hb_000078_170 Hb_000078_170 Hb_005962_010--Hb_000078_170 Hb_008556_020 Hb_008556_020 Hb_005962_010--Hb_008556_020 Hb_002311_230 Hb_002311_230 Hb_005962_010--Hb_002311_230 Hb_011639_150 Hb_011639_150 Hb_005962_010--Hb_011639_150 Hb_001766_040 Hb_001766_040 Hb_005962_010--Hb_001766_040 Hb_119886_040 Hb_119886_040 Hb_005962_010--Hb_119886_040 Hb_000078_170--Hb_011639_150 Hb_000330_080 Hb_000330_080 Hb_000078_170--Hb_000330_080 Hb_000078_170--Hb_008556_020 Hb_001709_130 Hb_001709_130 Hb_000078_170--Hb_001709_130 Hb_000078_170--Hb_002311_230 Hb_008556_020--Hb_119886_040 Hb_008556_020--Hb_011639_150 Hb_008556_020--Hb_002311_230 Hb_007044_010 Hb_007044_010 Hb_008556_020--Hb_007044_010 Hb_000483_180 Hb_000483_180 Hb_002311_230--Hb_000483_180 Hb_002311_230--Hb_119886_040 Hb_002311_230--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_002311_230--Hb_011639_010 Hb_011639_150--Hb_001709_130 Hb_011639_150--Hb_119886_040 Hb_011639_150--Hb_002311_230 Hb_000062_110 Hb_000062_110 Hb_001766_040--Hb_000062_110 Hb_001366_160 Hb_001366_160 Hb_001766_040--Hb_001366_160 Hb_006573_010 Hb_006573_010 Hb_001766_040--Hb_006573_010 Hb_010407_190 Hb_010407_190 Hb_001766_040--Hb_010407_190 Hb_002368_070 Hb_002368_070 Hb_001766_040--Hb_002368_070 Hb_119886_040--Hb_000483_180 Hb_007223_010 Hb_007223_010 Hb_119886_040--Hb_007223_010 Hb_119886_040--Hb_011639_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55964 3.26423 0.720006 0.324251 8.66459 2.49425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.405915 0.239259 0.418251 1.86464 4.782

CAGE analysis