Hb_000330_080

Information

Type -
Description -
Location Contig330: 59109-65434
Sequence    

Annotation

kegg
ID rcu:RCOM_1595050
description auxilin, putative
nr
ID XP_002510415.1
description auxilin, putative [Ricinus communis]
swissprot
ID Q9FWS1
description Auxilin-like protein 1 OS=Arabidopsis thaliana GN=AUL1 PE=2 SV=2
trembl
ID B9R7X2
description Auxilin, putative OS=Ricinus communis GN=RCOM_1595050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34698: 60501-60855 , PASA_asmbl_34700: 61319-61617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_080 0.0 - - auxilin, putative [Ricinus communis]
2 Hb_032920_100 0.1578151667 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
3 Hb_000078_170 0.1592928866 - - -
4 Hb_001709_130 0.1735816936 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_008123_010 0.1867726432 - - -
6 Hb_004884_020 0.1938989147 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
7 Hb_003058_020 0.2080825856 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
8 Hb_005962_010 0.208748858 - - -
9 Hb_001009_100 0.2227442909 - - -
10 Hb_000703_300 0.2254999344 - - -
11 Hb_004738_110 0.2325704879 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
12 Hb_008556_020 0.23275186 - - -
13 Hb_143629_060 0.2332950639 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
14 Hb_002368_070 0.2335470385 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
15 Hb_002249_210 0.2350606723 - - -
16 Hb_031658_040 0.2359485863 - - -
17 Hb_004987_070 0.2359537829 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
18 Hb_002276_070 0.2376399525 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
19 Hb_007313_100 0.2403021596 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
20 Hb_002495_060 0.2419559443 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000330_080 Hb_000330_080 Hb_032920_100 Hb_032920_100 Hb_000330_080--Hb_032920_100 Hb_000078_170 Hb_000078_170 Hb_000330_080--Hb_000078_170 Hb_001709_130 Hb_001709_130 Hb_000330_080--Hb_001709_130 Hb_008123_010 Hb_008123_010 Hb_000330_080--Hb_008123_010 Hb_004884_020 Hb_004884_020 Hb_000330_080--Hb_004884_020 Hb_003058_020 Hb_003058_020 Hb_000330_080--Hb_003058_020 Hb_000284_100 Hb_000284_100 Hb_032920_100--Hb_000284_100 Hb_001009_100 Hb_001009_100 Hb_032920_100--Hb_001009_100 Hb_032920_100--Hb_001709_130 Hb_032920_100--Hb_004884_020 Hb_032920_100--Hb_008123_010 Hb_005962_010 Hb_005962_010 Hb_000078_170--Hb_005962_010 Hb_011639_150 Hb_011639_150 Hb_000078_170--Hb_011639_150 Hb_008556_020 Hb_008556_020 Hb_000078_170--Hb_008556_020 Hb_000078_170--Hb_001709_130 Hb_002311_230 Hb_002311_230 Hb_000078_170--Hb_002311_230 Hb_001709_130--Hb_011639_150 Hb_001709_130--Hb_004884_020 Hb_001709_130--Hb_001009_100 Hb_004361_020 Hb_004361_020 Hb_001709_130--Hb_004361_020 Hb_090530_010 Hb_090530_010 Hb_008123_010--Hb_090530_010 Hb_011616_020 Hb_011616_020 Hb_008123_010--Hb_011616_020 Hb_031658_040 Hb_031658_040 Hb_008123_010--Hb_031658_040 Hb_002276_070 Hb_002276_070 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060 Hb_004884_020--Hb_001009_100 Hb_003388_030 Hb_003388_030 Hb_004884_020--Hb_003388_030 Hb_004884_020--Hb_003058_020 Hb_004987_070 Hb_004987_070 Hb_004884_020--Hb_004987_070 Hb_000384_080 Hb_000384_080 Hb_004884_020--Hb_000384_080 Hb_001117_160 Hb_001117_160 Hb_004884_020--Hb_001117_160 Hb_003058_020--Hb_004987_070 Hb_000015_100 Hb_000015_100 Hb_003058_020--Hb_000015_100 Hb_048141_020 Hb_048141_020 Hb_003058_020--Hb_048141_020 Hb_011931_060 Hb_011931_060 Hb_003058_020--Hb_011931_060 Hb_006618_050 Hb_006618_050 Hb_003058_020--Hb_006618_050 Hb_007035_040 Hb_007035_040 Hb_003058_020--Hb_007035_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82335 1.35403 1.45548 0.858915 7.61451 4.52412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0380455 0.0748531 0.619068 2.56914 9.01301

CAGE analysis