Hb_032920_100

Information

Type -
Description -
Location Contig32920: 74302-103983
Sequence    

Annotation

kegg
ID pop:POPTR_0002s00940g
description POPTRDRAFT_753893; hypothetical protein
nr
ID XP_002301914.2
description hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9GPR7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s00940g PE=4 SV=2
Gene Ontology
ID GO:0016740
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032920_100 0.0 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
2 Hb_000330_080 0.1578151667 - - auxilin, putative [Ricinus communis]
3 Hb_000284_100 0.2136739262 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
4 Hb_001009_100 0.2153552219 - - -
5 Hb_001709_130 0.2154922105 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_004884_020 0.2197210478 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
7 Hb_008123_010 0.2203472579 - - -
8 Hb_003058_020 0.2273171998 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
9 Hb_004244_010 0.2275311337 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
10 Hb_000732_170 0.228379891 - - PREDICTED: putative PAP-specific phosphatase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000959_090 0.2333918512 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004987_070 0.2343102915 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
13 Hb_067776_020 0.2371319097 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
14 Hb_021068_010 0.2375956249 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
15 Hb_146339_010 0.2387803842 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
16 Hb_007101_200 0.2391897582 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
17 Hb_000078_170 0.2472291251 - - -
18 Hb_003388_030 0.2473084651 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
19 Hb_001019_120 0.2474020249 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
20 Hb_002518_110 0.2490187852 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]

Gene co-expression network

sample Hb_032920_100 Hb_032920_100 Hb_000330_080 Hb_000330_080 Hb_032920_100--Hb_000330_080 Hb_000284_100 Hb_000284_100 Hb_032920_100--Hb_000284_100 Hb_001009_100 Hb_001009_100 Hb_032920_100--Hb_001009_100 Hb_001709_130 Hb_001709_130 Hb_032920_100--Hb_001709_130 Hb_004884_020 Hb_004884_020 Hb_032920_100--Hb_004884_020 Hb_008123_010 Hb_008123_010 Hb_032920_100--Hb_008123_010 Hb_000078_170 Hb_000078_170 Hb_000330_080--Hb_000078_170 Hb_000330_080--Hb_001709_130 Hb_000330_080--Hb_008123_010 Hb_000330_080--Hb_004884_020 Hb_003058_020 Hb_003058_020 Hb_000330_080--Hb_003058_020 Hb_000732_170 Hb_000732_170 Hb_000284_100--Hb_000732_170 Hb_011310_160 Hb_011310_160 Hb_000284_100--Hb_011310_160 Hb_000470_080 Hb_000470_080 Hb_000284_100--Hb_000470_080 Hb_004117_100 Hb_004117_100 Hb_000284_100--Hb_004117_100 Hb_000284_120 Hb_000284_120 Hb_000284_100--Hb_000284_120 Hb_028912_040 Hb_028912_040 Hb_000284_100--Hb_028912_040 Hb_003388_030 Hb_003388_030 Hb_001009_100--Hb_003388_030 Hb_001009_100--Hb_004884_020 Hb_004987_070 Hb_004987_070 Hb_001009_100--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_001009_100--Hb_000300_120 Hb_000069_320 Hb_000069_320 Hb_001009_100--Hb_000069_320 Hb_067776_020 Hb_067776_020 Hb_001009_100--Hb_067776_020 Hb_001709_130--Hb_000078_170 Hb_011639_150 Hb_011639_150 Hb_001709_130--Hb_011639_150 Hb_001709_130--Hb_004884_020 Hb_001709_130--Hb_001009_100 Hb_004361_020 Hb_004361_020 Hb_001709_130--Hb_004361_020 Hb_004884_020--Hb_003388_030 Hb_004884_020--Hb_003058_020 Hb_004884_020--Hb_004987_070 Hb_000384_080 Hb_000384_080 Hb_004884_020--Hb_000384_080 Hb_001117_160 Hb_001117_160 Hb_004884_020--Hb_001117_160 Hb_090530_010 Hb_090530_010 Hb_008123_010--Hb_090530_010 Hb_011616_020 Hb_011616_020 Hb_008123_010--Hb_011616_020 Hb_031658_040 Hb_031658_040 Hb_008123_010--Hb_031658_040 Hb_002276_070 Hb_002276_070 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120511 0.0780863 0.060595 0.0411557 0.27431 0.36786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0880618 0.148358 0.40413

CAGE analysis