Hb_000284_120

Information

Type -
Description -
Location Contig284: 168516-179714
Sequence    

Annotation

kegg
ID tcc:TCM_006174
description hypothetical protein
nr
ID XP_012066660.1
description PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
swissprot
ID Q6DFF2
description Bromodomain-containing protein 4B OS=Xenopus laevis GN=brd4-b PE=2 SV=1
trembl
ID A0A067L1Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00234 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29725: 168532-179699 , PASA_asmbl_29726: 173871-174121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_120 0.0 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
2 Hb_000004_030 0.0860124684 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
3 Hb_001431_120 0.0898798954 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
4 Hb_041828_010 0.0903850061 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
5 Hb_000264_350 0.09082002 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
6 Hb_007456_040 0.0923560631 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
7 Hb_000960_040 0.0930013237 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
8 Hb_008484_010 0.0975840146 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
9 Hb_011310_160 0.0976931927 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
10 Hb_012053_080 0.1002729451 - - AP-2 complex subunit alpha, putative [Ricinus communis]
11 Hb_004659_020 0.1027846986 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
12 Hb_008484_060 0.1053478782 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
13 Hb_010174_040 0.1077212818 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
14 Hb_000035_170 0.1087580016 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
15 Hb_000082_070 0.1093324359 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
16 Hb_001504_040 0.1108953384 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
17 Hb_000110_190 0.1110167328 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
18 Hb_003645_060 0.1111058847 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
19 Hb_118840_030 0.1116412111 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
20 Hb_003544_140 0.1129736813 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000284_120 Hb_000284_120 Hb_000004_030 Hb_000004_030 Hb_000284_120--Hb_000004_030 Hb_001431_120 Hb_001431_120 Hb_000284_120--Hb_001431_120 Hb_041828_010 Hb_041828_010 Hb_000284_120--Hb_041828_010 Hb_000264_350 Hb_000264_350 Hb_000284_120--Hb_000264_350 Hb_007456_040 Hb_007456_040 Hb_000284_120--Hb_007456_040 Hb_000960_040 Hb_000960_040 Hb_000284_120--Hb_000960_040 Hb_000004_030--Hb_000264_350 Hb_000004_030--Hb_000960_040 Hb_000004_030--Hb_041828_010 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_012146_050 Hb_012146_050 Hb_001431_120--Hb_012146_050 Hb_001341_180 Hb_001341_180 Hb_001431_120--Hb_001341_180 Hb_005402_040 Hb_005402_040 Hb_001431_120--Hb_005402_040 Hb_003645_060 Hb_003645_060 Hb_001431_120--Hb_003645_060 Hb_004064_050 Hb_004064_050 Hb_001431_120--Hb_004064_050 Hb_001381_050 Hb_001381_050 Hb_001431_120--Hb_001381_050 Hb_008484_010 Hb_008484_010 Hb_041828_010--Hb_008484_010 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_000345_360 Hb_000345_360 Hb_041828_010--Hb_000345_360 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_000264_350--Hb_000960_040 Hb_000579_240 Hb_000579_240 Hb_000264_350--Hb_000579_240 Hb_002675_030 Hb_002675_030 Hb_000264_350--Hb_002675_030 Hb_000183_050 Hb_000183_050 Hb_000264_350--Hb_000183_050 Hb_001821_150 Hb_001821_150 Hb_000264_350--Hb_001821_150 Hb_001504_040 Hb_001504_040 Hb_007456_040--Hb_001504_040 Hb_000365_030 Hb_000365_030 Hb_007456_040--Hb_000365_030 Hb_002814_060 Hb_002814_060 Hb_007456_040--Hb_002814_060 Hb_007456_040--Hb_041828_010 Hb_118840_030 Hb_118840_030 Hb_007456_040--Hb_118840_030 Hb_008511_020 Hb_008511_020 Hb_000960_040--Hb_008511_020 Hb_000667_030 Hb_000667_030 Hb_000960_040--Hb_000667_030 Hb_000960_040--Hb_002675_030 Hb_010294_010 Hb_010294_010 Hb_000960_040--Hb_010294_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2478 3.84878 4.73423 5.63716 8.20905 9.97141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99542 1.79543 4.08996 8.43888 7.66607

CAGE analysis