Hb_000284_100

Information

Type -
Description -
Location Contig284: 163516-166507
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23240g
description hypothetical protein
nr
ID XP_011028344.1
description PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GKU4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23240g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29724: 163440-164170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_100 0.0 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
2 Hb_000732_170 0.1785444 - - PREDICTED: putative PAP-specific phosphatase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_011310_160 0.2006059307 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
4 Hb_000470_080 0.2019432941 - - Caldesmon, putative [Ricinus communis]
5 Hb_004117_100 0.203979154 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
6 Hb_000284_120 0.2039971764 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
7 Hb_028912_040 0.2100582795 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
8 Hb_000021_030 0.2117464107 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
9 Hb_001718_050 0.2129831674 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
10 Hb_174473_010 0.2135106058 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
11 Hb_032920_100 0.2136739262 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
12 Hb_007333_030 0.213827412 - - -
13 Hb_000159_100 0.214087893 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
14 Hb_104812_010 0.216066051 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
15 Hb_000850_050 0.2172923153 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
16 Hb_051407_010 0.2182639504 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
17 Hb_012490_060 0.2186130228 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
18 Hb_001005_050 0.2193373887 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
19 Hb_000768_190 0.21992163 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
20 Hb_002095_010 0.2206345858 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000284_100 Hb_000284_100 Hb_000732_170 Hb_000732_170 Hb_000284_100--Hb_000732_170 Hb_011310_160 Hb_011310_160 Hb_000284_100--Hb_011310_160 Hb_000470_080 Hb_000470_080 Hb_000284_100--Hb_000470_080 Hb_004117_100 Hb_004117_100 Hb_000284_100--Hb_004117_100 Hb_000284_120 Hb_000284_120 Hb_000284_100--Hb_000284_120 Hb_028912_040 Hb_028912_040 Hb_000284_100--Hb_028912_040 Hb_000077_220 Hb_000077_220 Hb_000732_170--Hb_000077_220 Hb_007333_030 Hb_007333_030 Hb_000732_170--Hb_007333_030 Hb_003471_020 Hb_003471_020 Hb_000732_170--Hb_003471_020 Hb_004770_050 Hb_004770_050 Hb_000732_170--Hb_004770_050 Hb_007456_040 Hb_007456_040 Hb_000732_170--Hb_007456_040 Hb_000398_120 Hb_000398_120 Hb_011310_160--Hb_000398_120 Hb_006660_010 Hb_006660_010 Hb_011310_160--Hb_006660_010 Hb_003988_010 Hb_003988_010 Hb_011310_160--Hb_003988_010 Hb_025477_040 Hb_025477_040 Hb_011310_160--Hb_025477_040 Hb_010174_040 Hb_010174_040 Hb_011310_160--Hb_010174_040 Hb_002974_060 Hb_002974_060 Hb_011310_160--Hb_002974_060 Hb_007805_010 Hb_007805_010 Hb_000470_080--Hb_007805_010 Hb_005679_050 Hb_005679_050 Hb_000470_080--Hb_005679_050 Hb_000470_080--Hb_002974_060 Hb_000470_080--Hb_011310_160 Hb_011928_020 Hb_011928_020 Hb_000470_080--Hb_011928_020 Hb_003294_090 Hb_003294_090 Hb_000470_080--Hb_003294_090 Hb_000313_260 Hb_000313_260 Hb_004117_100--Hb_000313_260 Hb_000463_140 Hb_000463_140 Hb_004117_100--Hb_000463_140 Hb_034432_030 Hb_034432_030 Hb_004117_100--Hb_034432_030 Hb_000853_210 Hb_000853_210 Hb_004117_100--Hb_000853_210 Hb_005488_150 Hb_005488_150 Hb_004117_100--Hb_005488_150 Hb_048476_170 Hb_048476_170 Hb_004117_100--Hb_048476_170 Hb_000004_030 Hb_000004_030 Hb_000284_120--Hb_000004_030 Hb_001431_120 Hb_001431_120 Hb_000284_120--Hb_001431_120 Hb_041828_010 Hb_041828_010 Hb_000284_120--Hb_041828_010 Hb_000264_350 Hb_000264_350 Hb_000284_120--Hb_000264_350 Hb_000284_120--Hb_007456_040 Hb_000960_040 Hb_000960_040 Hb_000284_120--Hb_000960_040 Hb_127552_060 Hb_127552_060 Hb_028912_040--Hb_127552_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_004224_020 Hb_004224_020 Hb_028912_040--Hb_004224_020 Hb_187953_010 Hb_187953_010 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_028912_040--Hb_000470_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55248 0.788811 2.45965 2.32306 6.91989 8.53315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.346757 0.27247 5.16795 4.75814 5.36526

CAGE analysis