Hb_004224_020

Information

Type -
Description -
Location Contig4224: 14502-33691
Sequence    

Annotation

kegg
ID rcu:RCOM_0660980
description hypothetical protein
nr
ID XP_012084386.1
description PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9STD4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0660980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41791: 14565-17808 , PASA_asmbl_41792: 17821-28326 , PASA_asmbl_41793: 28363-28710 , PASA_asmbl_41794: 29211-30193 , PASA_asmbl_41795: 30210-30669 , PASA_asmbl_41796: 31120-32181 , PASA_asmbl_41798: 32751-32908 , PASA_asmbl_41799: 33403-33548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004224_020 0.0 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
2 Hb_187953_010 0.1138796861 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
3 Hb_000470_080 0.1156751881 - - Caldesmon, putative [Ricinus communis]
4 Hb_028912_040 0.1167394047 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
5 Hb_010427_010 0.1194827368 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
6 Hb_000236_310 0.1196892141 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
7 Hb_006660_010 0.1205535547 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
8 Hb_000574_070 0.1223075597 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
9 Hb_003294_090 0.1241758994 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000066_170 0.1249278446 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]
11 Hb_005679_050 0.1250668158 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_007805_010 0.1255026039 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
13 Hb_000007_450 0.1295042893 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
14 Hb_002095_010 0.1330919444 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
15 Hb_085781_020 0.1332452479 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
16 Hb_003488_030 0.1335001922 - - PREDICTED: protein CPR-5 [Jatropha curcas]
17 Hb_000544_050 0.1338168317 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_007803_050 0.1341655197 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
19 Hb_000201_110 0.1347925978 - - hypothetical protein JCGZ_21690 [Jatropha curcas]
20 Hb_005901_020 0.1349666153 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004224_020 Hb_004224_020 Hb_187953_010 Hb_187953_010 Hb_004224_020--Hb_187953_010 Hb_000470_080 Hb_000470_080 Hb_004224_020--Hb_000470_080 Hb_028912_040 Hb_028912_040 Hb_004224_020--Hb_028912_040 Hb_010427_010 Hb_010427_010 Hb_004224_020--Hb_010427_010 Hb_000236_310 Hb_000236_310 Hb_004224_020--Hb_000236_310 Hb_006660_010 Hb_006660_010 Hb_004224_020--Hb_006660_010 Hb_012322_010 Hb_012322_010 Hb_187953_010--Hb_012322_010 Hb_000140_210 Hb_000140_210 Hb_187953_010--Hb_000140_210 Hb_000718_080 Hb_000718_080 Hb_187953_010--Hb_000718_080 Hb_085781_020 Hb_085781_020 Hb_187953_010--Hb_085781_020 Hb_187953_010--Hb_000236_310 Hb_001195_470 Hb_001195_470 Hb_187953_010--Hb_001195_470 Hb_007805_010 Hb_007805_010 Hb_000470_080--Hb_007805_010 Hb_005679_050 Hb_005679_050 Hb_000470_080--Hb_005679_050 Hb_002974_060 Hb_002974_060 Hb_000470_080--Hb_002974_060 Hb_011310_160 Hb_011310_160 Hb_000470_080--Hb_011310_160 Hb_011928_020 Hb_011928_020 Hb_000470_080--Hb_011928_020 Hb_003294_090 Hb_003294_090 Hb_000470_080--Hb_003294_090 Hb_127552_060 Hb_127552_060 Hb_028912_040--Hb_127552_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_028912_040--Hb_000470_080 Hb_010427_010--Hb_006660_010 Hb_003449_070 Hb_003449_070 Hb_010427_010--Hb_003449_070 Hb_010427_010--Hb_011310_160 Hb_000212_310 Hb_000212_310 Hb_010427_010--Hb_000212_310 Hb_010427_010--Hb_003294_090 Hb_010427_010--Hb_005679_050 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_000236_310--Hb_002600_140 Hb_007803_050 Hb_007803_050 Hb_006660_010--Hb_007803_050 Hb_006660_010--Hb_011310_160 Hb_002811_060 Hb_002811_060 Hb_006660_010--Hb_002811_060 Hb_006660_010--Hb_000212_310 Hb_007062_020 Hb_007062_020 Hb_006660_010--Hb_007062_020 Hb_000592_030 Hb_000592_030 Hb_006660_010--Hb_000592_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06659 5.02262 3.01749 4.16619 3.40691 13.3194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29659 2.65096 7.07171 7.61876 7.0633

CAGE analysis