Hb_127552_060

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig127552: 80902-85124
Sequence    

Annotation

kegg
ID rcu:RCOM_0519950
description protein binding protein, putative
nr
ID XP_002528790.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9FT92
description Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2
trembl
ID B9SS21
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0519950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08402: 46894-84587 , PASA_asmbl_08405: 84780-85989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127552_060 0.0 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
2 Hb_008447_040 0.0865786815 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
3 Hb_028912_040 0.1091202481 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
4 Hb_004448_090 0.1127528387 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
5 Hb_187953_010 0.1209547441 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
6 Hb_000236_310 0.1345216039 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
7 Hb_000159_100 0.1365191252 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
8 Hb_000110_190 0.1386473386 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
9 Hb_162603_010 0.1402296707 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_001862_140 0.1409156317 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
11 Hb_098315_080 0.1410382432 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
12 Hb_007026_040 0.1416815224 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
13 Hb_004800_200 0.1424674188 - - -
14 Hb_002600_140 0.1434192454 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
15 Hb_002414_060 0.1448606665 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
16 Hb_000784_070 0.1480720637 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
17 Hb_007558_100 0.1481886392 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
18 Hb_012678_010 0.1484091767 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
19 Hb_000429_150 0.1485660754 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
20 Hb_000718_080 0.1491093601 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]

Gene co-expression network

sample Hb_127552_060 Hb_127552_060 Hb_008447_040 Hb_008447_040 Hb_127552_060--Hb_008447_040 Hb_028912_040 Hb_028912_040 Hb_127552_060--Hb_028912_040 Hb_004448_090 Hb_004448_090 Hb_127552_060--Hb_004448_090 Hb_187953_010 Hb_187953_010 Hb_127552_060--Hb_187953_010 Hb_000236_310 Hb_000236_310 Hb_127552_060--Hb_000236_310 Hb_000159_100 Hb_000159_100 Hb_127552_060--Hb_000159_100 Hb_008447_040--Hb_004448_090 Hb_007023_030 Hb_007023_030 Hb_008447_040--Hb_007023_030 Hb_000429_150 Hb_000429_150 Hb_008447_040--Hb_000429_150 Hb_008447_040--Hb_000236_310 Hb_002414_060 Hb_002414_060 Hb_008447_040--Hb_002414_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_004224_020 Hb_004224_020 Hb_028912_040--Hb_004224_020 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_000470_080 Hb_000470_080 Hb_028912_040--Hb_000470_080 Hb_004448_090--Hb_028912_040 Hb_000071_180 Hb_000071_180 Hb_004448_090--Hb_000071_180 Hb_000038_080 Hb_000038_080 Hb_004448_090--Hb_000038_080 Hb_002419_030 Hb_002419_030 Hb_004448_090--Hb_002419_030 Hb_012322_010 Hb_012322_010 Hb_187953_010--Hb_012322_010 Hb_000140_210 Hb_000140_210 Hb_187953_010--Hb_000140_210 Hb_000718_080 Hb_000718_080 Hb_187953_010--Hb_000718_080 Hb_085781_020 Hb_085781_020 Hb_187953_010--Hb_085781_020 Hb_187953_010--Hb_000236_310 Hb_001195_470 Hb_001195_470 Hb_187953_010--Hb_001195_470 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_000236_310--Hb_002600_140 Hb_000031_110 Hb_000031_110 Hb_000159_100--Hb_000031_110 Hb_000872_010 Hb_000872_010 Hb_000159_100--Hb_000872_010 Hb_011310_160 Hb_011310_160 Hb_000159_100--Hb_011310_160 Hb_003294_090 Hb_003294_090 Hb_000159_100--Hb_003294_090 Hb_025193_040 Hb_025193_040 Hb_000159_100--Hb_025193_040 Hb_002667_050 Hb_002667_050 Hb_000159_100--Hb_002667_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.70747 1.8426 1.71609 5.99687 2.93102 10.7663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.432 1.78316 3.86033 8.29003 7.11139

CAGE analysis