Hb_000031_110

Information

Type -
Description -
Location Contig31: 89129-94828
Sequence    

Annotation

kegg
ID tcc:TCM_036827
description Coatomer, beta subunit isoform 1
nr
ID XP_007011607.1
description Coatomer, beta subunit isoform 1 [Theobroma cacao]
swissprot
ID Q9SV21
description Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=2 SV=2
trembl
ID A0A061GJB6
description Coatomer subunit beta OS=Theobroma cacao GN=TCM_036827 PE=4 SV=1
Gene Ontology
ID GO:0030126
description coatomer subunit beta-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32779: 89186-94664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_110 0.0 - - Coatomer, beta subunit isoform 1 [Theobroma cacao]
2 Hb_000366_200 0.0724734016 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
3 Hb_000159_100 0.0794778069 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
4 Hb_000872_010 0.0799546794 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
5 Hb_000784_070 0.0816267749 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
6 Hb_000264_350 0.093527054 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
7 Hb_001440_030 0.0939712081 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
8 Hb_001821_150 0.0973162958 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
9 Hb_000212_380 0.0985369349 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
10 Hb_000110_190 0.1004287497 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
11 Hb_001369_360 0.1019069669 - - embryo yellow protein, partial [Manihot esculenta]
12 Hb_010294_010 0.1059842041 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
13 Hb_001936_130 0.1064369815 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
14 Hb_000915_240 0.1069465195 - - catalytic, putative [Ricinus communis]
15 Hb_003994_150 0.1069994699 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
16 Hb_000960_040 0.1071758798 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
17 Hb_000230_260 0.1071961342 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
18 Hb_004019_120 0.1078323796 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
19 Hb_009296_040 0.1080715949 - - hypothetical protein L484_007435 [Morus notabilis]
20 Hb_000976_100 0.1086462708 - - eukaryotic translation elongation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000031_110 Hb_000031_110 Hb_000366_200 Hb_000366_200 Hb_000031_110--Hb_000366_200 Hb_000159_100 Hb_000159_100 Hb_000031_110--Hb_000159_100 Hb_000872_010 Hb_000872_010 Hb_000031_110--Hb_000872_010 Hb_000784_070 Hb_000784_070 Hb_000031_110--Hb_000784_070 Hb_000264_350 Hb_000264_350 Hb_000031_110--Hb_000264_350 Hb_001440_030 Hb_001440_030 Hb_000031_110--Hb_001440_030 Hb_002026_150 Hb_002026_150 Hb_000366_200--Hb_002026_150 Hb_000352_300 Hb_000352_300 Hb_000366_200--Hb_000352_300 Hb_002169_050 Hb_002169_050 Hb_000366_200--Hb_002169_050 Hb_010174_040 Hb_010174_040 Hb_000366_200--Hb_010174_040 Hb_002909_140 Hb_002909_140 Hb_000366_200--Hb_002909_140 Hb_000159_100--Hb_000872_010 Hb_011310_160 Hb_011310_160 Hb_000159_100--Hb_011310_160 Hb_003294_090 Hb_003294_090 Hb_000159_100--Hb_003294_090 Hb_025193_040 Hb_025193_040 Hb_000159_100--Hb_025193_040 Hb_002667_050 Hb_002667_050 Hb_000159_100--Hb_002667_050 Hb_000110_190 Hb_000110_190 Hb_000872_010--Hb_000110_190 Hb_000872_010--Hb_001440_030 Hb_000592_030 Hb_000592_030 Hb_000872_010--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000872_010--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_000872_010--Hb_000053_040 Hb_001876_010 Hb_001876_010 Hb_000872_010--Hb_001876_010 Hb_000718_080 Hb_000718_080 Hb_000784_070--Hb_000718_080 Hb_000960_040 Hb_000960_040 Hb_000784_070--Hb_000960_040 Hb_000130_180 Hb_000130_180 Hb_000784_070--Hb_000130_180 Hb_027337_100 Hb_027337_100 Hb_000784_070--Hb_027337_100 Hb_000784_070--Hb_000872_010 Hb_000004_030 Hb_000004_030 Hb_000264_350--Hb_000004_030 Hb_000264_350--Hb_000960_040 Hb_000579_240 Hb_000579_240 Hb_000264_350--Hb_000579_240 Hb_002675_030 Hb_002675_030 Hb_000264_350--Hb_002675_030 Hb_000183_050 Hb_000183_050 Hb_000264_350--Hb_000183_050 Hb_001821_150 Hb_001821_150 Hb_000264_350--Hb_001821_150 Hb_000066_170 Hb_000066_170 Hb_001440_030--Hb_000066_170 Hb_000261_480 Hb_000261_480 Hb_001440_030--Hb_000261_480 Hb_000352_340 Hb_000352_340 Hb_001440_030--Hb_000352_340 Hb_001440_030--Hb_001876_010 Hb_009296_040 Hb_009296_040 Hb_001440_030--Hb_009296_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1375 11.2575 11.4561 30.2307 24.4894 24.4356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.63237 9.78762 23.5143 31.4763 21.9117

CAGE analysis