Hb_000784_070

Information

Type -
Description -
Location Contig784: 109551-118870
Sequence    

Annotation

kegg
ID rcu:RCOM_0685080
description alpha-(1,4)-fucosyltransferase, putative
nr
ID XP_002526800.1
description alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
swissprot
ID Q9C8W3
description Alpha-(1,4)-fucosyltransferase OS=Arabidopsis thaliana GN=FUT13 PE=2 SV=2
trembl
ID B9SLD1
description Alpha-(1,4)-fucosyltransferase, putative OS=Ricinus communis GN=RCOM_0685080 PE=3 SV=1
Gene Ontology
ID GO:0005794
description alpha-( )-fucosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58041: 110515-110783 , PASA_asmbl_58043: 116985-117264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000784_070 0.0 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
2 Hb_000718_080 0.0810266835 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
3 Hb_000031_110 0.0816267749 - - Coatomer, beta subunit isoform 1 [Theobroma cacao]
4 Hb_000960_040 0.0945375797 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
5 Hb_000130_180 0.0986185022 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
6 Hb_027337_100 0.1001100093 - - Putative phagocytic receptor 1b [Gossypium arboreum]
7 Hb_000872_010 0.1025291975 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
8 Hb_009569_040 0.1041699432 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
9 Hb_007558_100 0.1054947881 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
10 Hb_000110_190 0.1061801363 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
11 Hb_000237_040 0.1083181324 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
12 Hb_000976_100 0.1084935871 - - eukaryotic translation elongation factor, putative [Ricinus communis]
13 Hb_000004_030 0.1096348189 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
14 Hb_000429_150 0.1099795642 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
15 Hb_001369_360 0.1100113267 - - embryo yellow protein, partial [Manihot esculenta]
16 Hb_000264_350 0.112967648 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
17 Hb_000409_030 0.1146225627 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
18 Hb_012322_010 0.1146924891 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_000365_400 0.1155191329 - - metal ion transporter, putative [Ricinus communis]
20 Hb_002226_080 0.1159696623 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000784_070 Hb_000784_070 Hb_000718_080 Hb_000718_080 Hb_000784_070--Hb_000718_080 Hb_000031_110 Hb_000031_110 Hb_000784_070--Hb_000031_110 Hb_000960_040 Hb_000960_040 Hb_000784_070--Hb_000960_040 Hb_000130_180 Hb_000130_180 Hb_000784_070--Hb_000130_180 Hb_027337_100 Hb_027337_100 Hb_000784_070--Hb_027337_100 Hb_000872_010 Hb_000872_010 Hb_000784_070--Hb_000872_010 Hb_032050_040 Hb_032050_040 Hb_000718_080--Hb_032050_040 Hb_012322_010 Hb_012322_010 Hb_000718_080--Hb_012322_010 Hb_000429_150 Hb_000429_150 Hb_000718_080--Hb_000429_150 Hb_000830_030 Hb_000830_030 Hb_000718_080--Hb_000830_030 Hb_152202_010 Hb_152202_010 Hb_000718_080--Hb_152202_010 Hb_000366_200 Hb_000366_200 Hb_000031_110--Hb_000366_200 Hb_000159_100 Hb_000159_100 Hb_000031_110--Hb_000159_100 Hb_000031_110--Hb_000872_010 Hb_000264_350 Hb_000264_350 Hb_000031_110--Hb_000264_350 Hb_001440_030 Hb_001440_030 Hb_000031_110--Hb_001440_030 Hb_000004_030 Hb_000004_030 Hb_000960_040--Hb_000004_030 Hb_000960_040--Hb_000264_350 Hb_008511_020 Hb_008511_020 Hb_000960_040--Hb_008511_020 Hb_000667_030 Hb_000667_030 Hb_000960_040--Hb_000667_030 Hb_002675_030 Hb_002675_030 Hb_000960_040--Hb_002675_030 Hb_010294_010 Hb_010294_010 Hb_000960_040--Hb_010294_010 Hb_001258_110 Hb_001258_110 Hb_000130_180--Hb_001258_110 Hb_001821_150 Hb_001821_150 Hb_000130_180--Hb_001821_150 Hb_001014_210 Hb_001014_210 Hb_000130_180--Hb_001014_210 Hb_000140_350 Hb_000140_350 Hb_000130_180--Hb_000140_350 Hb_002284_250 Hb_002284_250 Hb_000130_180--Hb_002284_250 Hb_004531_120 Hb_004531_120 Hb_000130_180--Hb_004531_120 Hb_000237_040 Hb_000237_040 Hb_027337_100--Hb_000237_040 Hb_027337_100--Hb_000004_030 Hb_126976_010 Hb_126976_010 Hb_027337_100--Hb_126976_010 Hb_000976_100 Hb_000976_100 Hb_027337_100--Hb_000976_100 Hb_001195_470 Hb_001195_470 Hb_027337_100--Hb_001195_470 Hb_000110_190 Hb_000110_190 Hb_000872_010--Hb_000110_190 Hb_000872_010--Hb_001440_030 Hb_000592_030 Hb_000592_030 Hb_000872_010--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000872_010--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_000872_010--Hb_000053_040 Hb_001876_010 Hb_001876_010 Hb_000872_010--Hb_001876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2033 2.83991 2.48683 9.2256 5.90594 7.57862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6654 3.2151 4.23517 6.93028 7.09997

CAGE analysis