Hb_027337_100

Information

Type -
Description -
Location Contig27337: 56065-72020
Sequence    

Annotation

kegg
ID eus:EUTSA_v10003877mg
description hypothetical protein
nr
ID KHG00678.1
description Putative phagocytic receptor 1b [Gossypium arboreum]
swissprot
ID Q9ZPS7
description Transmembrane 9 superfamily member 3 OS=Arabidopsis thaliana GN=TMN3 PE=2 SV=1
trembl
ID A0A0B0MEV1
description Putative phagocytic receptor 1b OS=Gossypium arboreum GN=F383_18456 PE=4 SV=1
Gene Ontology
ID GO:0016021
description phagocytic receptor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28538: 55954-59974 , PASA_asmbl_28540: 59645-60351 , PASA_asmbl_28541: 63207-67202 , PASA_asmbl_28542: 65493-65927 , PASA_asmbl_28544: 67788-71571
cDNA
(Sanger)
(ID:Location)		 010_A08.ab1: 63212-64377 , 020_L16.ab1: 56120-57433 , 037_C07.ab1: 63212-64401

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027337_100 0.0 - - Putative phagocytic receptor 1b [Gossypium arboreum]
2 Hb_000237_040 0.0913019232 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
3 Hb_000784_070 0.1001100093 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
4 Hb_000004_030 0.1011603631 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
5 Hb_126976_010 0.1069173283 - - -
6 Hb_000976_100 0.1073350863 - - eukaryotic translation elongation factor, putative [Ricinus communis]
7 Hb_001195_470 0.110383399 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
8 Hb_000264_350 0.1116320026 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
9 Hb_000960_040 0.1126043877 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
10 Hb_000579_240 0.1140712756 - - phosphatidylinositol transporter, putative [Ricinus communis]
11 Hb_041828_010 0.1150887562 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
12 Hb_002226_080 0.115449617 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
13 Hb_001437_190 0.11572671 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000056_130 0.115938806 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
15 Hb_003417_010 0.1170686027 - - PREDICTED: protein TPLATE [Jatropha curcas]
16 Hb_027445_020 0.1183333174 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
17 Hb_008484_010 0.1189678235 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
18 Hb_001916_090 0.1190798434 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
19 Hb_000809_230 0.1197932565 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
20 Hb_002631_070 0.1206683297 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]

Gene co-expression network

sample Hb_027337_100 Hb_027337_100 Hb_000237_040 Hb_000237_040 Hb_027337_100--Hb_000237_040 Hb_000784_070 Hb_000784_070 Hb_027337_100--Hb_000784_070 Hb_000004_030 Hb_000004_030 Hb_027337_100--Hb_000004_030 Hb_126976_010 Hb_126976_010 Hb_027337_100--Hb_126976_010 Hb_000976_100 Hb_000976_100 Hb_027337_100--Hb_000976_100 Hb_001195_470 Hb_001195_470 Hb_027337_100--Hb_001195_470 Hb_000237_040--Hb_000976_100 Hb_027445_020 Hb_027445_020 Hb_000237_040--Hb_027445_020 Hb_000237_040--Hb_126976_010 Hb_001369_360 Hb_001369_360 Hb_000237_040--Hb_001369_360 Hb_000237_050 Hb_000237_050 Hb_000237_040--Hb_000237_050 Hb_055062_040 Hb_055062_040 Hb_000237_040--Hb_055062_040 Hb_000718_080 Hb_000718_080 Hb_000784_070--Hb_000718_080 Hb_000031_110 Hb_000031_110 Hb_000784_070--Hb_000031_110 Hb_000960_040 Hb_000960_040 Hb_000784_070--Hb_000960_040 Hb_000130_180 Hb_000130_180 Hb_000784_070--Hb_000130_180 Hb_000872_010 Hb_000872_010 Hb_000784_070--Hb_000872_010 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000004_030--Hb_000960_040 Hb_041828_010 Hb_041828_010 Hb_000004_030--Hb_041828_010 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_002874_110 Hb_002874_110 Hb_126976_010--Hb_002874_110 Hb_000890_070 Hb_000890_070 Hb_126976_010--Hb_000890_070 Hb_000809_230 Hb_000809_230 Hb_126976_010--Hb_000809_230 Hb_126976_010--Hb_000976_100 Hb_004679_030 Hb_004679_030 Hb_126976_010--Hb_004679_030 Hb_000976_100--Hb_027445_020 Hb_000976_100--Hb_001369_360 Hb_002025_330 Hb_002025_330 Hb_000976_100--Hb_002025_330 Hb_000363_040 Hb_000363_040 Hb_000976_100--Hb_000363_040 Hb_004019_120 Hb_004019_120 Hb_000976_100--Hb_004019_120 Hb_000723_220 Hb_000723_220 Hb_001195_470--Hb_000723_220 Hb_001195_470--Hb_004019_120 Hb_000680_110 Hb_000680_110 Hb_001195_470--Hb_000680_110 Hb_003417_010 Hb_003417_010 Hb_001195_470--Hb_003417_010 Hb_001821_150 Hb_001821_150 Hb_001195_470--Hb_001821_150 Hb_004531_120 Hb_004531_120 Hb_001195_470--Hb_004531_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9237 17.2269 13.9415 49.4073 25.2638 38.765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5391 7.46135 20.3747 32.6021 51.9101

CAGE analysis