Hb_008447_040

Information

Type transcription factor
Description TF Family: HB
Location Contig8447: 29194-40765
Sequence    

Annotation

kegg
ID rcu:RCOM_0702490
description homeobox protein knotted-1, putative
nr
ID XP_002523551.1
description homeobox protein knotted-1, putative [Ricinus communis]
swissprot
ID P48000
description Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1
trembl
ID B9SC32
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_0702490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60191: 28648-36336 , PASA_asmbl_60192: 35356-35618 , PASA_asmbl_60194: 37343-37958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008447_040 0.0 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
2 Hb_127552_060 0.0865786815 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
3 Hb_004448_090 0.1100237478 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
4 Hb_007023_030 0.1187505427 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
5 Hb_000429_150 0.1235235108 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
6 Hb_000236_310 0.1274741564 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
7 Hb_002414_060 0.1287717786 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
8 Hb_026745_020 0.1312147591 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
9 Hb_098315_080 0.1318300129 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
10 Hb_162603_010 0.1354686425 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_004800_200 0.1355530718 - - -
12 Hb_003544_160 0.1358148527 - - -
13 Hb_000038_080 0.1375244551 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
14 Hb_002965_090 0.1381488407 - - importin alpha, putative [Ricinus communis]
15 Hb_000110_190 0.1392873089 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
16 Hb_004317_060 0.1394869573 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
17 Hb_187953_010 0.1398645892 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
18 Hb_001449_040 0.1406046163 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
19 Hb_005701_060 0.142222377 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
20 Hb_006373_040 0.1449046801 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_008447_040 Hb_008447_040 Hb_127552_060 Hb_127552_060 Hb_008447_040--Hb_127552_060 Hb_004448_090 Hb_004448_090 Hb_008447_040--Hb_004448_090 Hb_007023_030 Hb_007023_030 Hb_008447_040--Hb_007023_030 Hb_000429_150 Hb_000429_150 Hb_008447_040--Hb_000429_150 Hb_000236_310 Hb_000236_310 Hb_008447_040--Hb_000236_310 Hb_002414_060 Hb_002414_060 Hb_008447_040--Hb_002414_060 Hb_028912_040 Hb_028912_040 Hb_127552_060--Hb_028912_040 Hb_127552_060--Hb_004448_090 Hb_187953_010 Hb_187953_010 Hb_127552_060--Hb_187953_010 Hb_127552_060--Hb_000236_310 Hb_000159_100 Hb_000159_100 Hb_127552_060--Hb_000159_100 Hb_004448_090--Hb_028912_040 Hb_000071_180 Hb_000071_180 Hb_004448_090--Hb_000071_180 Hb_000038_080 Hb_000038_080 Hb_004448_090--Hb_000038_080 Hb_002419_030 Hb_002419_030 Hb_004448_090--Hb_002419_030 Hb_002768_060 Hb_002768_060 Hb_007023_030--Hb_002768_060 Hb_004480_100 Hb_004480_100 Hb_007023_030--Hb_004480_100 Hb_000789_200 Hb_000789_200 Hb_007023_030--Hb_000789_200 Hb_000656_010 Hb_000656_010 Hb_007023_030--Hb_000656_010 Hb_003467_030 Hb_003467_030 Hb_007023_030--Hb_003467_030 Hb_001876_010 Hb_001876_010 Hb_007023_030--Hb_001876_010 Hb_007638_030 Hb_007638_030 Hb_000429_150--Hb_007638_030 Hb_000140_280 Hb_000140_280 Hb_000429_150--Hb_000140_280 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_004567_090 Hb_004567_090 Hb_000429_150--Hb_004567_090 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_002600_140 Hb_002600_140 Hb_000236_310--Hb_002600_140 Hb_143629_130 Hb_143629_130 Hb_002414_060--Hb_143629_130 Hb_007558_100 Hb_007558_100 Hb_002414_060--Hb_007558_100 Hb_004317_060 Hb_004317_060 Hb_002414_060--Hb_004317_060 Hb_138475_010 Hb_138475_010 Hb_002414_060--Hb_138475_010 Hb_002414_060--Hb_000140_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.385 12.8141 8.13959 22.2892 11.337 46.4253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0127 12.5884 16.1737 34.3507 37.9931

CAGE analysis