Hb_138475_010

Information

Type -
Description -
Location Contig138475: 327-971
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11290g
description POPTRDRAFT_572581; hypothetical protein
nr
ID XP_011040823.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
swissprot
ID Q9SH26
description Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
trembl
ID B9I9F9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s11290g PE=4 SV=2
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138475_010 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
2 Hb_007558_100 0.0938908293 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
3 Hb_008970_030 0.0997715889 - - arf gtpase-activating protein, putative [Ricinus communis]
4 Hb_002414_060 0.1001159027 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
5 Hb_000917_130 0.101329061 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
6 Hb_062537_010 0.1049546804 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
7 Hb_000787_160 0.1079457256 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
8 Hb_086085_020 0.1093121844 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
9 Hb_005218_020 0.110013533 - - Uncharacterized protein isoform 3 [Theobroma cacao]
10 Hb_000140_280 0.1115872961 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
11 Hb_002150_040 0.1116737824 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
12 Hb_000429_150 0.1120527937 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
13 Hb_000095_080 0.1160333131 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
14 Hb_003544_050 0.1169256261 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
15 Hb_000322_080 0.1173238389 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
16 Hb_000069_210 0.1197747432 - - PREDICTED: exportin-2 [Jatropha curcas]
17 Hb_004055_120 0.1198743052 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
18 Hb_000072_130 0.1223739917 - - hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
19 Hb_000258_240 0.1224294349 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
20 Hb_142343_010 0.1225106992 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_138475_010 Hb_138475_010 Hb_007558_100 Hb_007558_100 Hb_138475_010--Hb_007558_100 Hb_008970_030 Hb_008970_030 Hb_138475_010--Hb_008970_030 Hb_002414_060 Hb_002414_060 Hb_138475_010--Hb_002414_060 Hb_000917_130 Hb_000917_130 Hb_138475_010--Hb_000917_130 Hb_062537_010 Hb_062537_010 Hb_138475_010--Hb_062537_010 Hb_000787_160 Hb_000787_160 Hb_138475_010--Hb_000787_160 Hb_000429_150 Hb_000429_150 Hb_007558_100--Hb_000429_150 Hb_007558_100--Hb_002414_060 Hb_012678_020 Hb_012678_020 Hb_007558_100--Hb_012678_020 Hb_002686_310 Hb_002686_310 Hb_007558_100--Hb_002686_310 Hb_055062_040 Hb_055062_040 Hb_007558_100--Hb_055062_040 Hb_084670_010 Hb_084670_010 Hb_007558_100--Hb_084670_010 Hb_012498_010 Hb_012498_010 Hb_008970_030--Hb_012498_010 Hb_000159_090 Hb_000159_090 Hb_008970_030--Hb_000159_090 Hb_007481_010 Hb_007481_010 Hb_008970_030--Hb_007481_010 Hb_003025_100 Hb_003025_100 Hb_008970_030--Hb_003025_100 Hb_000192_080 Hb_000192_080 Hb_008970_030--Hb_000192_080 Hb_013726_090 Hb_013726_090 Hb_008970_030--Hb_013726_090 Hb_002414_060--Hb_000429_150 Hb_143629_130 Hb_143629_130 Hb_002414_060--Hb_143629_130 Hb_004317_060 Hb_004317_060 Hb_002414_060--Hb_004317_060 Hb_000140_280 Hb_000140_280 Hb_002414_060--Hb_000140_280 Hb_004055_120 Hb_004055_120 Hb_000917_130--Hb_004055_120 Hb_003529_030 Hb_003529_030 Hb_000917_130--Hb_003529_030 Hb_003998_040 Hb_003998_040 Hb_000917_130--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_000917_130--Hb_005218_020 Hb_000256_150 Hb_000256_150 Hb_000917_130--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_000917_130--Hb_000477_100 Hb_000025_190 Hb_000025_190 Hb_062537_010--Hb_000025_190 Hb_001348_020 Hb_001348_020 Hb_062537_010--Hb_001348_020 Hb_000115_150 Hb_000115_150 Hb_062537_010--Hb_000115_150 Hb_023001_040 Hb_023001_040 Hb_062537_010--Hb_023001_040 Hb_003988_050 Hb_003988_050 Hb_062537_010--Hb_003988_050 Hb_000258_240 Hb_000258_240 Hb_062537_010--Hb_000258_240 Hb_004102_170 Hb_004102_170 Hb_000787_160--Hb_004102_170 Hb_000345_160 Hb_000345_160 Hb_000787_160--Hb_000345_160 Hb_005015_060 Hb_005015_060 Hb_000787_160--Hb_005015_060 Hb_000322_080 Hb_000322_080 Hb_000787_160--Hb_000322_080 Hb_004705_170 Hb_004705_170 Hb_000787_160--Hb_004705_170 Hb_001662_100 Hb_001662_100 Hb_000787_160--Hb_001662_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.71453 8.27318 11.4619 26.9858 4.35123 22.2589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.99207 12.0666 14.5059 21.9313 16.3439

CAGE analysis