Hb_002686_310

Information

Type -
Description -
Location Contig2686: 221146-226187
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05030g
description POPTRDRAFT_729942; aquaporin SIP1.2 family protein
nr
ID XP_012092712.1
description PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
swissprot
ID Q9ATM2
description Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1
trembl
ID B9I5U1
description Aquaporin SIP1.2 family protein OS=Populus trichocarpa GN=POPTR_0013s05030g PE=3 SV=2
Gene Ontology
ID GO:0016021
description aquaporin sip1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28042: 221123-221366 , PASA_asmbl_28043: 225679-226131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_310 0.0 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
2 Hb_007558_100 0.0873108824 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
3 Hb_075315_010 0.0938652529 - - ornithine aminotransferase [Camellia sinensis]
4 Hb_003055_040 0.0978737195 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
5 Hb_000915_240 0.0987805189 - - catalytic, putative [Ricinus communis]
6 Hb_179306_020 0.1018297236 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
7 Hb_143629_130 0.1033594069 - - unnamed protein product [Coffea canephora]
8 Hb_000159_120 0.1086093813 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
9 Hb_005663_110 0.1087329874 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
10 Hb_001258_110 0.1090170416 - - transporter, putative [Ricinus communis]
11 Hb_001014_210 0.1094332996 - - CYP51 [Hevea brasiliensis]
12 Hb_004800_200 0.1113799148 - - -
13 Hb_004668_090 0.1113962443 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
14 Hb_001369_360 0.112213504 - - embryo yellow protein, partial [Manihot esculenta]
15 Hb_000692_160 0.1135411271 - - Transportin 1 isoform 1 [Theobroma cacao]
16 Hb_004450_070 0.1155340503 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
17 Hb_003906_170 0.1173829917 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_055062_040 0.1182163459 - - ceramidase, putative [Ricinus communis]
19 Hb_012678_020 0.1185698588 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
20 Hb_005081_020 0.1189352032 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_310 Hb_002686_310 Hb_007558_100 Hb_007558_100 Hb_002686_310--Hb_007558_100 Hb_075315_010 Hb_075315_010 Hb_002686_310--Hb_075315_010 Hb_003055_040 Hb_003055_040 Hb_002686_310--Hb_003055_040 Hb_000915_240 Hb_000915_240 Hb_002686_310--Hb_000915_240 Hb_179306_020 Hb_179306_020 Hb_002686_310--Hb_179306_020 Hb_143629_130 Hb_143629_130 Hb_002686_310--Hb_143629_130 Hb_000429_150 Hb_000429_150 Hb_007558_100--Hb_000429_150 Hb_002414_060 Hb_002414_060 Hb_007558_100--Hb_002414_060 Hb_012678_020 Hb_012678_020 Hb_007558_100--Hb_012678_020 Hb_055062_040 Hb_055062_040 Hb_007558_100--Hb_055062_040 Hb_084670_010 Hb_084670_010 Hb_007558_100--Hb_084670_010 Hb_083799_010 Hb_083799_010 Hb_075315_010--Hb_083799_010 Hb_005081_020 Hb_005081_020 Hb_075315_010--Hb_005081_020 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_007747_170 Hb_007747_170 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160 Hb_003055_040--Hb_179306_020 Hb_001258_110 Hb_001258_110 Hb_003055_040--Hb_001258_110 Hb_007137_050 Hb_007137_050 Hb_003055_040--Hb_007137_050 Hb_000836_550 Hb_000836_550 Hb_003055_040--Hb_000836_550 Hb_003055_040--Hb_004450_070 Hb_001500_100 Hb_001500_100 Hb_003055_040--Hb_001500_100 Hb_001369_360 Hb_001369_360 Hb_000915_240--Hb_001369_360 Hb_000109_170 Hb_000109_170 Hb_000915_240--Hb_000109_170 Hb_000352_300 Hb_000352_300 Hb_000915_240--Hb_000352_300 Hb_000130_180 Hb_000130_180 Hb_000915_240--Hb_000130_180 Hb_001014_210 Hb_001014_210 Hb_000915_240--Hb_001014_210 Hb_000981_030 Hb_000981_030 Hb_179306_020--Hb_000981_030 Hb_002968_080 Hb_002968_080 Hb_179306_020--Hb_002968_080 Hb_005663_110 Hb_005663_110 Hb_179306_020--Hb_005663_110 Hb_011674_020 Hb_011674_020 Hb_179306_020--Hb_011674_020 Hb_179306_020--Hb_039946_050 Hb_143629_130--Hb_002414_060 Hb_143629_130--Hb_007558_100 Hb_000035_330 Hb_000035_330 Hb_143629_130--Hb_000035_330 Hb_143629_130--Hb_003055_040 Hb_004317_060 Hb_004317_060 Hb_143629_130--Hb_004317_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02269 2.63457 1.64268 6.57134 2.81216 4.00216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5404 2.39778 1.94837 8.38626 3.73519

CAGE analysis