Hb_000077_220

Information

Type -
Description -
Location Contig77: 197369-199806
Sequence    

Annotation

kegg
ID rcu:RCOM_1175330
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088415.1
description PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
swissprot
ID Q9SKU6
description Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1
trembl
ID B9RW08
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1175330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57595: 198585-199759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_220 0.0 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
2 Hb_001221_140 0.1398049197 - - DNA binding protein, putative [Ricinus communis]
3 Hb_002814_060 0.1480712811 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
4 Hb_143960_010 0.151211742 - - -
5 Hb_000599_170 0.1615194381 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
6 Hb_001508_020 0.1663800615 - - myosin vIII, putative [Ricinus communis]
7 Hb_000106_020 0.1693058526 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
8 Hb_002307_080 0.1714976241 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000732_170 0.1748713391 - - PREDICTED: putative PAP-specific phosphatase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_013818_030 0.1761193733 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012528_020 0.1795608845 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Jatropha curcas]
12 Hb_003059_010 0.1797357595 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
13 Hb_004064_050 0.1806963354 - - Structural maintenance of chromosome, putative [Ricinus communis]
14 Hb_000256_020 0.1816494468 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
15 Hb_006787_060 0.1821538145 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
16 Hb_006618_090 0.1829419561 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
17 Hb_032920_130 0.1830841013 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
18 Hb_004884_030 0.1835439309 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
19 Hb_011920_020 0.1840228339 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
20 Hb_005323_010 0.1841636303 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_220 Hb_000077_220 Hb_001221_140 Hb_001221_140 Hb_000077_220--Hb_001221_140 Hb_002814_060 Hb_002814_060 Hb_000077_220--Hb_002814_060 Hb_143960_010 Hb_143960_010 Hb_000077_220--Hb_143960_010 Hb_000599_170 Hb_000599_170 Hb_000077_220--Hb_000599_170 Hb_001508_020 Hb_001508_020 Hb_000077_220--Hb_001508_020 Hb_000106_020 Hb_000106_020 Hb_000077_220--Hb_000106_020 Hb_003939_040 Hb_003939_040 Hb_001221_140--Hb_003939_040 Hb_007380_140 Hb_007380_140 Hb_001221_140--Hb_007380_140 Hb_001882_130 Hb_001882_130 Hb_001221_140--Hb_001882_130 Hb_178968_050 Hb_178968_050 Hb_001221_140--Hb_178968_050 Hb_008247_020 Hb_008247_020 Hb_001221_140--Hb_008247_020 Hb_007456_040 Hb_007456_040 Hb_002814_060--Hb_007456_040 Hb_086287_010 Hb_086287_010 Hb_002814_060--Hb_086287_010 Hb_006508_030 Hb_006508_030 Hb_002814_060--Hb_006508_030 Hb_074197_020 Hb_074197_020 Hb_002814_060--Hb_074197_020 Hb_001194_020 Hb_001194_020 Hb_002814_060--Hb_001194_020 Hb_002784_030 Hb_002784_030 Hb_002814_060--Hb_002784_030 Hb_005260_040 Hb_005260_040 Hb_143960_010--Hb_005260_040 Hb_002375_110 Hb_002375_110 Hb_143960_010--Hb_002375_110 Hb_007481_030 Hb_007481_030 Hb_143960_010--Hb_007481_030 Hb_054885_020 Hb_054885_020 Hb_143960_010--Hb_054885_020 Hb_143960_010--Hb_000106_020 Hb_000120_520 Hb_000120_520 Hb_143960_010--Hb_000120_520 Hb_027380_030 Hb_027380_030 Hb_000599_170--Hb_027380_030 Hb_002805_060 Hb_002805_060 Hb_000599_170--Hb_002805_060 Hb_003894_040 Hb_003894_040 Hb_000599_170--Hb_003894_040 Hb_001051_090 Hb_001051_090 Hb_000599_170--Hb_001051_090 Hb_006915_020 Hb_006915_020 Hb_000599_170--Hb_006915_020 Hb_002092_100 Hb_002092_100 Hb_000599_170--Hb_002092_100 Hb_003529_130 Hb_003529_130 Hb_001508_020--Hb_003529_130 Hb_010925_020 Hb_010925_020 Hb_001508_020--Hb_010925_020 Hb_001369_350 Hb_001369_350 Hb_001508_020--Hb_001369_350 Hb_000021_020 Hb_000021_020 Hb_001508_020--Hb_000021_020 Hb_001508_020--Hb_003894_040 Hb_018202_050 Hb_018202_050 Hb_001508_020--Hb_018202_050 Hb_000122_080 Hb_000122_080 Hb_000106_020--Hb_000122_080 Hb_033554_020 Hb_033554_020 Hb_000106_020--Hb_033554_020 Hb_001373_160 Hb_001373_160 Hb_000106_020--Hb_001373_160 Hb_000406_060 Hb_000406_060 Hb_000106_020--Hb_000406_060 Hb_098315_090 Hb_098315_090 Hb_000106_020--Hb_098315_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.58881 5.51685 6.26738 4.06103 5.66859 6.3275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0576363 0.0680185 1.83642 4.46663 4.28097

CAGE analysis