Hb_003939_040

Information

Type -
Description -
Location Contig3939: 30246-39304
Sequence    

Annotation

kegg
ID cit:102610344
description uncharacterized LOC102610344
nr
ID XP_006446999.1
description hypothetical protein CICLE_v10014350mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4W2U2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014350mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39448: 30273-36531 , PASA_asmbl_39449: 31276-36531 , PASA_asmbl_39450: 36806-39129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003939_040 0.0 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
2 Hb_000680_110 0.091782674 - - Endosomal P24A protein precursor, putative [Ricinus communis]
3 Hb_000037_220 0.0953477135 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
4 Hb_000556_220 0.0955954234 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
5 Hb_000094_310 0.1014140937 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
6 Hb_004531_120 0.1030842821 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
7 Hb_011202_020 0.1036510908 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
8 Hb_061878_010 0.105351018 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
9 Hb_002375_110 0.1086564792 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
10 Hb_007186_020 0.1086570498 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
11 Hb_003417_010 0.1090556463 - - PREDICTED: protein TPLATE [Jatropha curcas]
12 Hb_001221_140 0.1092386091 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000183_050 0.1097172675 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
14 Hb_027136_010 0.1116134858 - - hypothetical protein L484_010426 [Morus notabilis]
15 Hb_000176_130 0.1124544972 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
16 Hb_001195_470 0.1133634894 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
17 Hb_004410_120 0.1144847812 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
18 Hb_004645_070 0.1163639906 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
19 Hb_000264_350 0.1164040213 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
20 Hb_178968_050 0.1168431066 - - PREDICTED: probable serine incorporator [Jatropha curcas]

Gene co-expression network

sample Hb_003939_040 Hb_003939_040 Hb_000680_110 Hb_000680_110 Hb_003939_040--Hb_000680_110 Hb_000037_220 Hb_000037_220 Hb_003939_040--Hb_000037_220 Hb_000556_220 Hb_000556_220 Hb_003939_040--Hb_000556_220 Hb_000094_310 Hb_000094_310 Hb_003939_040--Hb_000094_310 Hb_004531_120 Hb_004531_120 Hb_003939_040--Hb_004531_120 Hb_011202_020 Hb_011202_020 Hb_003939_040--Hb_011202_020 Hb_000680_110--Hb_004531_120 Hb_001195_470 Hb_001195_470 Hb_000680_110--Hb_001195_470 Hb_000723_220 Hb_000723_220 Hb_000680_110--Hb_000723_220 Hb_000264_350 Hb_000264_350 Hb_000680_110--Hb_000264_350 Hb_000230_260 Hb_000230_260 Hb_000680_110--Hb_000230_260 Hb_002902_080 Hb_002902_080 Hb_000680_110--Hb_002902_080 Hb_005563_060 Hb_005563_060 Hb_000037_220--Hb_005563_060 Hb_000037_220--Hb_000556_220 Hb_000003_100 Hb_000003_100 Hb_000037_220--Hb_000003_100 Hb_140049_080 Hb_140049_080 Hb_000037_220--Hb_140049_080 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010 Hb_085781_020 Hb_085781_020 Hb_000556_220--Hb_085781_020 Hb_002311_100 Hb_002311_100 Hb_000556_220--Hb_002311_100 Hb_004019_120 Hb_004019_120 Hb_000556_220--Hb_004019_120 Hb_140627_020 Hb_140627_020 Hb_000556_220--Hb_140627_020 Hb_003060_060 Hb_003060_060 Hb_000556_220--Hb_003060_060 Hb_000696_050 Hb_000696_050 Hb_000094_310--Hb_000696_050 Hb_003078_020 Hb_003078_020 Hb_000094_310--Hb_003078_020 Hb_003729_030 Hb_003729_030 Hb_000094_310--Hb_003729_030 Hb_000094_310--Hb_002311_100 Hb_009615_170 Hb_009615_170 Hb_000094_310--Hb_009615_170 Hb_000139_130 Hb_000139_130 Hb_004531_120--Hb_000139_130 Hb_004109_230 Hb_004109_230 Hb_004531_120--Hb_004109_230 Hb_000062_020 Hb_000062_020 Hb_004531_120--Hb_000062_020 Hb_002284_250 Hb_002284_250 Hb_004531_120--Hb_002284_250 Hb_000130_180 Hb_000130_180 Hb_004531_120--Hb_000130_180 Hb_001235_230 Hb_001235_230 Hb_011202_020--Hb_001235_230 Hb_005402_040 Hb_005402_040 Hb_011202_020--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_011202_020--Hb_003124_160 Hb_005357_260 Hb_005357_260 Hb_011202_020--Hb_005357_260 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_009486_170 Hb_009486_170 Hb_011202_020--Hb_009486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31146 8.73547 4.28428 9.72825 7.14152 10.2963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14482 2.05103 6.43315 8.11636 6.27473

CAGE analysis