Hb_001882_130

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1882: 126216-150767
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID CAN68941.1
description hypothetical protein VITISV_028996 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HZN0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03870 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18595: 135881-136655 , PASA_asmbl_18597: 143419-144779
cDNA
(Sanger)
(ID:Location)		 010_E16.ab1: 135881-136655 , 037_G16.ab1: 135881-136632

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_130 0.0 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
2 Hb_002478_030 0.123929842 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
3 Hb_004097_120 0.1263825065 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_003939_040 0.1301045154 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
5 Hb_028472_010 0.138477249 - - glycosyltransferase, putative [Ricinus communis]
6 Hb_000635_200 0.1395917171 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
7 Hb_001221_140 0.1416836628 - - DNA binding protein, putative [Ricinus communis]
8 Hb_009367_080 0.1432187065 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
9 Hb_005563_060 0.1483962089 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
10 Hb_003417_010 0.148545877 - - PREDICTED: protein TPLATE [Jatropha curcas]
11 Hb_092000_010 0.1497074147 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
12 Hb_001008_170 0.1527111938 transcription factor TF Family: mTERF RNA binding protein, putative [Ricinus communis]
13 Hb_001552_030 0.1537841475 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_010407_060 0.1556916223 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
15 Hb_001801_020 0.1578618733 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
16 Hb_008014_040 0.1584508825 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
17 Hb_005649_080 0.1589058811 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_000037_220 0.1595190461 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
19 Hb_000085_260 0.1595427612 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
20 Hb_012738_030 0.1596133272 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001882_130 Hb_001882_130 Hb_002478_030 Hb_002478_030 Hb_001882_130--Hb_002478_030 Hb_004097_120 Hb_004097_120 Hb_001882_130--Hb_004097_120 Hb_003939_040 Hb_003939_040 Hb_001882_130--Hb_003939_040 Hb_028472_010 Hb_028472_010 Hb_001882_130--Hb_028472_010 Hb_000635_200 Hb_000635_200 Hb_001882_130--Hb_000635_200 Hb_001221_140 Hb_001221_140 Hb_001882_130--Hb_001221_140 Hb_001008_170 Hb_001008_170 Hb_002478_030--Hb_001008_170 Hb_000684_080 Hb_000684_080 Hb_002478_030--Hb_000684_080 Hb_001257_030 Hb_001257_030 Hb_002478_030--Hb_001257_030 Hb_159809_030 Hb_159809_030 Hb_002478_030--Hb_159809_030 Hb_001488_220 Hb_001488_220 Hb_002478_030--Hb_001488_220 Hb_000634_020 Hb_000634_020 Hb_002478_030--Hb_000634_020 Hb_004097_120--Hb_001008_170 Hb_000661_110 Hb_000661_110 Hb_004097_120--Hb_000661_110 Hb_006185_060 Hb_006185_060 Hb_004097_120--Hb_006185_060 Hb_000479_150 Hb_000479_150 Hb_004097_120--Hb_000479_150 Hb_004097_120--Hb_001221_140 Hb_000680_110 Hb_000680_110 Hb_003939_040--Hb_000680_110 Hb_000037_220 Hb_000037_220 Hb_003939_040--Hb_000037_220 Hb_000556_220 Hb_000556_220 Hb_003939_040--Hb_000556_220 Hb_000094_310 Hb_000094_310 Hb_003939_040--Hb_000094_310 Hb_004531_120 Hb_004531_120 Hb_003939_040--Hb_004531_120 Hb_011202_020 Hb_011202_020 Hb_003939_040--Hb_011202_020 Hb_009367_080 Hb_009367_080 Hb_028472_010--Hb_009367_080 Hb_002375_110 Hb_002375_110 Hb_028472_010--Hb_002375_110 Hb_005563_060 Hb_005563_060 Hb_028472_010--Hb_005563_060 Hb_000836_020 Hb_000836_020 Hb_028472_010--Hb_000836_020 Hb_028472_010--Hb_000037_220 Hb_011242_060 Hb_011242_060 Hb_028472_010--Hb_011242_060 Hb_004645_070 Hb_004645_070 Hb_000635_200--Hb_004645_070 Hb_002092_070 Hb_002092_070 Hb_000635_200--Hb_002092_070 Hb_000010_420 Hb_000010_420 Hb_000635_200--Hb_000010_420 Hb_002045_250 Hb_002045_250 Hb_000635_200--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_000635_200--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000635_200--Hb_002284_170 Hb_001221_140--Hb_003939_040 Hb_007380_140 Hb_007380_140 Hb_001221_140--Hb_007380_140 Hb_000077_220 Hb_000077_220 Hb_001221_140--Hb_000077_220 Hb_178968_050 Hb_178968_050 Hb_001221_140--Hb_178968_050 Hb_008247_020 Hb_008247_020 Hb_001221_140--Hb_008247_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4662 1.66937 1.05753 2.28229 0.677764 1.34373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125547 0.158079 1.25002 1.13557 1.26773

CAGE analysis