Hb_001008_170

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1008: 153503-154672
Sequence    

Annotation

kegg
ID rcu:RCOM_1278180
description RNA binding protein, putative
nr
ID XP_002527654.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNT5
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1278180 PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00499: 153175-154869
cDNA
(Sanger)
(ID:Location)		 006_A19.ab1: 154011-154839 , 022_N04.ab1: 154078-154839 , 027_J05.ab1: 154117-154874 , 036_K24.ab1: 154118-154874

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_170 0.0 transcription factor TF Family: mTERF RNA binding protein, putative [Ricinus communis]
2 Hb_000739_180 0.0901242185 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
3 Hb_002478_030 0.0917248485 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
4 Hb_003894_120 0.0976050027 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
5 Hb_030827_020 0.0993591065 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_001257_030 0.0996602871 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
7 Hb_004449_130 0.1018134663 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
8 Hb_009083_070 0.1029286555 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
9 Hb_000050_190 0.1076833101 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000684_080 0.1078229573 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
11 Hb_001269_210 0.1080464324 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
12 Hb_002276_240 0.108250825 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
13 Hb_005918_010 0.108344304 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
14 Hb_001863_360 0.1092234645 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
15 Hb_000390_250 0.1092833938 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
16 Hb_012395_170 0.1109935523 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010407_060 0.1130729322 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
18 Hb_000661_110 0.1131593358 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
19 Hb_000214_050 0.1135919674 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
20 Hb_002267_140 0.1142818263 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]

Gene co-expression network

sample Hb_001008_170 Hb_001008_170 Hb_000739_180 Hb_000739_180 Hb_001008_170--Hb_000739_180 Hb_002478_030 Hb_002478_030 Hb_001008_170--Hb_002478_030 Hb_003894_120 Hb_003894_120 Hb_001008_170--Hb_003894_120 Hb_030827_020 Hb_030827_020 Hb_001008_170--Hb_030827_020 Hb_001257_030 Hb_001257_030 Hb_001008_170--Hb_001257_030 Hb_004449_130 Hb_004449_130 Hb_001008_170--Hb_004449_130 Hb_000120_910 Hb_000120_910 Hb_000739_180--Hb_000120_910 Hb_000739_180--Hb_001257_030 Hb_085742_010 Hb_085742_010 Hb_000739_180--Hb_085742_010 Hb_009083_070 Hb_009083_070 Hb_000739_180--Hb_009083_070 Hb_002276_240 Hb_002276_240 Hb_000739_180--Hb_002276_240 Hb_008247_020 Hb_008247_020 Hb_000739_180--Hb_008247_020 Hb_000684_080 Hb_000684_080 Hb_002478_030--Hb_000684_080 Hb_002478_030--Hb_001257_030 Hb_159809_030 Hb_159809_030 Hb_002478_030--Hb_159809_030 Hb_001488_220 Hb_001488_220 Hb_002478_030--Hb_001488_220 Hb_000634_020 Hb_000634_020 Hb_002478_030--Hb_000634_020 Hb_003894_120--Hb_030827_020 Hb_001754_030 Hb_001754_030 Hb_003894_120--Hb_001754_030 Hb_003894_120--Hb_000739_180 Hb_000227_270 Hb_000227_270 Hb_003894_120--Hb_000227_270 Hb_002329_020 Hb_002329_020 Hb_003894_120--Hb_002329_020 Hb_003398_080 Hb_003398_080 Hb_003894_120--Hb_003398_080 Hb_002267_140 Hb_002267_140 Hb_030827_020--Hb_002267_140 Hb_000025_730 Hb_000025_730 Hb_030827_020--Hb_000025_730 Hb_000479_220 Hb_000479_220 Hb_030827_020--Hb_000479_220 Hb_000803_070 Hb_000803_070 Hb_030827_020--Hb_000803_070 Hb_002843_120 Hb_002843_120 Hb_030827_020--Hb_002843_120 Hb_005214_140 Hb_005214_140 Hb_001257_030--Hb_005214_140 Hb_001863_360 Hb_001863_360 Hb_001257_030--Hb_001863_360 Hb_000856_040 Hb_000856_040 Hb_001257_030--Hb_000856_040 Hb_001817_170 Hb_001817_170 Hb_001257_030--Hb_001817_170 Hb_010407_060 Hb_010407_060 Hb_001257_030--Hb_010407_060 Hb_000637_110 Hb_000637_110 Hb_004449_130--Hb_000637_110 Hb_005918_010 Hb_005918_010 Hb_004449_130--Hb_005918_010 Hb_000077_140 Hb_000077_140 Hb_004449_130--Hb_000077_140 Hb_005634_010 Hb_005634_010 Hb_004449_130--Hb_005634_010 Hb_000140_290 Hb_000140_290 Hb_004449_130--Hb_000140_290 Hb_005137_040 Hb_005137_040 Hb_004449_130--Hb_005137_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.31439 6.37945 6.58111 8.18689 3.82984 4.86709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55111 2.79623 7.21171 4.97052 5.16676

CAGE analysis