Hb_002478_030

Information

Type transcription factor
Description TF Family: SNF2
Location Contig2478: 30877-37432
Sequence    

Annotation

kegg
ID rcu:RCOM_0687520
description ATP-dependent helicase, putative
nr
ID XP_012086690.1
description PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
swissprot
ID Q9M297
description SNF2 domain-containing protein CLASSY 1 OS=Arabidopsis thaliana GN=CLSY1 PE=1 SV=1
trembl
ID A0A067LBY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01198 PE=4 SV=1
Gene Ontology
ID GO:0003677
description snf2 domain-containing protein classy 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25819: 30730-31248 , PASA_asmbl_25821: 32479-33490 , PASA_asmbl_25822: 33518-34080 , PASA_asmbl_25823: 34484-35582 , PASA_asmbl_25824: 35606-36396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002478_030 0.0 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
2 Hb_001008_170 0.0917248485 transcription factor TF Family: mTERF RNA binding protein, putative [Ricinus communis]
3 Hb_000684_080 0.1059024733 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
4 Hb_001257_030 0.1138980431 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
5 Hb_159809_030 0.1161899156 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
6 Hb_001488_220 0.1180118087 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_000634_020 0.1192330439 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
8 Hb_156850_090 0.1200822154 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_002784_030 0.1211100692 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
10 Hb_000017_230 0.1215955098 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
11 Hb_005650_010 0.1219044713 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000679_270 0.1226840337 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
13 Hb_001882_130 0.123929842 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
14 Hb_008014_040 0.1239814168 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
15 Hb_011310_110 0.1240858133 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
16 Hb_121089_030 0.1246716971 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
17 Hb_092000_010 0.1249524606 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
18 Hb_000635_090 0.1252965363 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
19 Hb_085742_010 0.1266165456 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
20 Hb_010407_060 0.1270867407 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]

Gene co-expression network

sample Hb_002478_030 Hb_002478_030 Hb_001008_170 Hb_001008_170 Hb_002478_030--Hb_001008_170 Hb_000684_080 Hb_000684_080 Hb_002478_030--Hb_000684_080 Hb_001257_030 Hb_001257_030 Hb_002478_030--Hb_001257_030 Hb_159809_030 Hb_159809_030 Hb_002478_030--Hb_159809_030 Hb_001488_220 Hb_001488_220 Hb_002478_030--Hb_001488_220 Hb_000634_020 Hb_000634_020 Hb_002478_030--Hb_000634_020 Hb_000739_180 Hb_000739_180 Hb_001008_170--Hb_000739_180 Hb_003894_120 Hb_003894_120 Hb_001008_170--Hb_003894_120 Hb_030827_020 Hb_030827_020 Hb_001008_170--Hb_030827_020 Hb_001008_170--Hb_001257_030 Hb_004449_130 Hb_004449_130 Hb_001008_170--Hb_004449_130 Hb_016347_020 Hb_016347_020 Hb_000684_080--Hb_016347_020 Hb_121089_030 Hb_121089_030 Hb_000684_080--Hb_121089_030 Hb_000317_510 Hb_000317_510 Hb_000684_080--Hb_000317_510 Hb_000373_080 Hb_000373_080 Hb_000684_080--Hb_000373_080 Hb_030736_060 Hb_030736_060 Hb_000684_080--Hb_030736_060 Hb_002784_030 Hb_002784_030 Hb_000684_080--Hb_002784_030 Hb_005214_140 Hb_005214_140 Hb_001257_030--Hb_005214_140 Hb_001257_030--Hb_000739_180 Hb_001863_360 Hb_001863_360 Hb_001257_030--Hb_001863_360 Hb_000856_040 Hb_000856_040 Hb_001257_030--Hb_000856_040 Hb_001817_170 Hb_001817_170 Hb_001257_030--Hb_001817_170 Hb_010407_060 Hb_010407_060 Hb_001257_030--Hb_010407_060 Hb_004102_170 Hb_004102_170 Hb_159809_030--Hb_004102_170 Hb_159809_030--Hb_121089_030 Hb_008511_020 Hb_008511_020 Hb_159809_030--Hb_008511_020 Hb_000049_020 Hb_000049_020 Hb_159809_030--Hb_000049_020 Hb_001440_020 Hb_001440_020 Hb_159809_030--Hb_001440_020 Hb_008014_040 Hb_008014_040 Hb_159809_030--Hb_008014_040 Hb_001552_030 Hb_001552_030 Hb_001488_220--Hb_001552_030 Hb_001488_220--Hb_008511_020 Hb_001488_220--Hb_002784_030 Hb_007445_010 Hb_007445_010 Hb_001488_220--Hb_007445_010 Hb_000238_030 Hb_000238_030 Hb_001488_220--Hb_000238_030 Hb_001789_030 Hb_001789_030 Hb_001488_220--Hb_001789_030 Hb_002837_040 Hb_002837_040 Hb_000634_020--Hb_002837_040 Hb_006588_160 Hb_006588_160 Hb_000634_020--Hb_006588_160 Hb_000261_210 Hb_000261_210 Hb_000634_020--Hb_000261_210 Hb_002749_080 Hb_002749_080 Hb_000634_020--Hb_002749_080 Hb_000634_020--Hb_000684_080 Hb_004096_060 Hb_004096_060 Hb_000634_020--Hb_004096_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2119 2.80825 3.59086 4.9981 1.81075 2.42898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10139 0.720957 3.09786 2.61435 4.06468

CAGE analysis