Hb_000739_180

Information

Type -
Description -
Location Contig739: 160521-162503
Sequence    

Annotation

kegg
ID rcu:RCOM_1612260
description hypothetical protein
nr
ID XP_012083563.1
description PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14517 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_180 0.0 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
2 Hb_000120_910 0.0696337418 - - plant ubiquilin, putative [Ricinus communis]
3 Hb_001257_030 0.0697757336 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
4 Hb_085742_010 0.070045067 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
5 Hb_009083_070 0.071705903 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
6 Hb_002276_240 0.0746147517 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
7 Hb_008247_020 0.07466197 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
8 Hb_000214_050 0.0781947037 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
9 Hb_001754_030 0.0782135029 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
10 Hb_000162_030 0.0786719938 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
11 Hb_031641_010 0.07904251 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003894_120 0.0799310644 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
13 Hb_000529_060 0.0800514548 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
14 Hb_000977_300 0.0806589022 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
15 Hb_000879_040 0.0821863745 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
16 Hb_001300_010 0.0821918799 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000809_160 0.0825618807 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
18 Hb_002267_140 0.0826541916 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
19 Hb_002205_250 0.0827819232 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
20 Hb_060094_020 0.0828692433 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000739_180 Hb_000739_180 Hb_000120_910 Hb_000120_910 Hb_000739_180--Hb_000120_910 Hb_001257_030 Hb_001257_030 Hb_000739_180--Hb_001257_030 Hb_085742_010 Hb_085742_010 Hb_000739_180--Hb_085742_010 Hb_009083_070 Hb_009083_070 Hb_000739_180--Hb_009083_070 Hb_002276_240 Hb_002276_240 Hb_000739_180--Hb_002276_240 Hb_008247_020 Hb_008247_020 Hb_000739_180--Hb_008247_020 Hb_004517_020 Hb_004517_020 Hb_000120_910--Hb_004517_020 Hb_000977_300 Hb_000977_300 Hb_000120_910--Hb_000977_300 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_001723_010 Hb_001723_010 Hb_000120_910--Hb_001723_010 Hb_005214_140 Hb_005214_140 Hb_001257_030--Hb_005214_140 Hb_001863_360 Hb_001863_360 Hb_001257_030--Hb_001863_360 Hb_000856_040 Hb_000856_040 Hb_001257_030--Hb_000856_040 Hb_001817_170 Hb_001817_170 Hb_001257_030--Hb_001817_170 Hb_010407_060 Hb_010407_060 Hb_001257_030--Hb_010407_060 Hb_000088_050 Hb_000088_050 Hb_085742_010--Hb_000088_050 Hb_001085_290 Hb_001085_290 Hb_085742_010--Hb_001085_290 Hb_000879_040 Hb_000879_040 Hb_085742_010--Hb_000879_040 Hb_000017_230 Hb_000017_230 Hb_085742_010--Hb_000017_230 Hb_092000_010 Hb_092000_010 Hb_085742_010--Hb_092000_010 Hb_009083_070--Hb_002276_240 Hb_184798_080 Hb_184798_080 Hb_009083_070--Hb_184798_080 Hb_004129_070 Hb_004129_070 Hb_009083_070--Hb_004129_070 Hb_001135_120 Hb_001135_120 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_002276_240--Hb_004129_070 Hb_002267_140 Hb_002267_140 Hb_002276_240--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_002276_240--Hb_001147_110 Hb_001767_140 Hb_001767_140 Hb_002276_240--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002276_240--Hb_008253_030 Hb_000317_510 Hb_000317_510 Hb_008247_020--Hb_000317_510 Hb_053079_020 Hb_053079_020 Hb_008247_020--Hb_053079_020 Hb_103747_020 Hb_103747_020 Hb_008247_020--Hb_103747_020 Hb_007929_080 Hb_007929_080 Hb_008247_020--Hb_007929_080 Hb_001405_190 Hb_001405_190 Hb_008247_020--Hb_001405_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.90714 7.41185 7.16735 5.63817 4.58269 4.31026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.36945 2.76067 4.79206 5.17106 4.92381

CAGE analysis