Hb_003894_120

Information

Type -
Description -
Location Contig3894: 85294-87186
Sequence    

Annotation

kegg
ID rcu:RCOM_1612260
description hypothetical protein
nr
ID XP_012083563.1
description PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14517 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39036: 85582-87445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_120 0.0 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
2 Hb_030827_020 0.0690532311 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
3 Hb_001754_030 0.0731830775 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
4 Hb_000739_180 0.0799310644 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
5 Hb_000227_270 0.0846738888 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
6 Hb_002329_020 0.0852774933 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
7 Hb_003398_080 0.0858836439 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
8 Hb_001257_030 0.0890152819 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
9 Hb_002267_140 0.0893348735 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
10 Hb_001300_010 0.0900974578 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000861_080 0.0904962245 - - PREDICTED: protein ELC-like [Jatropha curcas]
12 Hb_000479_070 0.0908639399 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
13 Hb_008937_010 0.0914355424 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
14 Hb_006275_020 0.092626554 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
15 Hb_010407_060 0.0932019958 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
16 Hb_001863_360 0.0943791245 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
17 Hb_000015_170 0.0945108469 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000120_910 0.0952498705 - - plant ubiquilin, putative [Ricinus communis]
19 Hb_004943_030 0.0959027534 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
20 Hb_000803_070 0.0959161789 - - PREDICTED: protein TRAUCO [Jatropha curcas]

Gene co-expression network

sample Hb_003894_120 Hb_003894_120 Hb_030827_020 Hb_030827_020 Hb_003894_120--Hb_030827_020 Hb_001754_030 Hb_001754_030 Hb_003894_120--Hb_001754_030 Hb_000739_180 Hb_000739_180 Hb_003894_120--Hb_000739_180 Hb_000227_270 Hb_000227_270 Hb_003894_120--Hb_000227_270 Hb_002329_020 Hb_002329_020 Hb_003894_120--Hb_002329_020 Hb_003398_080 Hb_003398_080 Hb_003894_120--Hb_003398_080 Hb_002267_140 Hb_002267_140 Hb_030827_020--Hb_002267_140 Hb_000025_730 Hb_000025_730 Hb_030827_020--Hb_000025_730 Hb_000479_220 Hb_000479_220 Hb_030827_020--Hb_000479_220 Hb_000803_070 Hb_000803_070 Hb_030827_020--Hb_000803_070 Hb_002843_120 Hb_002843_120 Hb_030827_020--Hb_002843_120 Hb_000809_160 Hb_000809_160 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_023226_070 Hb_023226_070 Hb_001754_030--Hb_023226_070 Hb_060094_020 Hb_060094_020 Hb_001754_030--Hb_060094_020 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_000723_110 Hb_000723_110 Hb_001754_030--Hb_000723_110 Hb_000120_910 Hb_000120_910 Hb_000739_180--Hb_000120_910 Hb_001257_030 Hb_001257_030 Hb_000739_180--Hb_001257_030 Hb_085742_010 Hb_085742_010 Hb_000739_180--Hb_085742_010 Hb_009083_070 Hb_009083_070 Hb_000739_180--Hb_009083_070 Hb_002276_240 Hb_002276_240 Hb_000739_180--Hb_002276_240 Hb_008247_020 Hb_008247_020 Hb_000739_180--Hb_008247_020 Hb_007290_030 Hb_007290_030 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_000227_270--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_000227_270--Hb_004943_030 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_000061_030 Hb_000061_030 Hb_002329_020--Hb_000061_030 Hb_001279_120 Hb_001279_120 Hb_002329_020--Hb_001279_120 Hb_002329_020--Hb_002267_140 Hb_002085_030 Hb_002085_030 Hb_002329_020--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_002329_020--Hb_012194_030 Hb_002329_020--Hb_001754_030 Hb_001300_010 Hb_001300_010 Hb_003398_080--Hb_001300_010 Hb_000861_080 Hb_000861_080 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_004994_240 Hb_004994_240 Hb_003398_080--Hb_004994_240 Hb_001545_150 Hb_001545_150 Hb_003398_080--Hb_001545_150 Hb_003398_080--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6845 17.9098 13.6919 12.8059 8.11812 8.04432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.95775 5.32343 11.4734 6.48487 9.47909

CAGE analysis