Hb_000634_020

Information

Type -
Description -
Location Contig634: 8690-12830
Sequence    

Annotation

kegg
ID rcu:RCOM_0856150
description Placental protein 11 precursor, putative
nr
ID KDP45985.1
description hypothetical protein JCGZ_11888 [Jatropha curcas]
swissprot
ID Q503V9
description Poly(U)-specific endoribonuclease-B OS=Danio rerio GN=endoub PE=2 SV=1
trembl
ID A0A067LMF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11888 PE=4 SV=1
Gene Ontology
ID GO:0016788
description poly -specific endoribonuclease-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51870: 8751-12864 , PASA_asmbl_51871: 9208-12604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000634_020 0.0 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
2 Hb_002837_040 0.0930422834 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
3 Hb_006588_160 0.096351308 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000261_210 0.1011322266 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_002749_080 0.1018401387 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000684_080 0.108559344 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
7 Hb_004096_060 0.1086250317 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
8 Hb_003398_100 0.1113398699 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000154_050 0.1146923122 - - CMP-sialic acid transporter, putative [Ricinus communis]
10 Hb_000503_020 0.1148204458 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
11 Hb_001053_080 0.1155223823 - - OsCesA3 protein [Morus notabilis]
12 Hb_001246_130 0.1176389504 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
13 Hb_004032_370 0.117920614 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
14 Hb_002478_030 0.1192330439 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
15 Hb_000054_040 0.1197833223 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
16 Hb_002784_030 0.1201149832 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
17 Hb_171334_010 0.1203704084 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
18 Hb_016347_020 0.1227025217 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
19 Hb_000371_090 0.1234959915 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
20 Hb_000072_090 0.124834794 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]

Gene co-expression network

sample Hb_000634_020 Hb_000634_020 Hb_002837_040 Hb_002837_040 Hb_000634_020--Hb_002837_040 Hb_006588_160 Hb_006588_160 Hb_000634_020--Hb_006588_160 Hb_000261_210 Hb_000261_210 Hb_000634_020--Hb_000261_210 Hb_002749_080 Hb_002749_080 Hb_000634_020--Hb_002749_080 Hb_000684_080 Hb_000684_080 Hb_000634_020--Hb_000684_080 Hb_004096_060 Hb_004096_060 Hb_000634_020--Hb_004096_060 Hb_000645_070 Hb_000645_070 Hb_002837_040--Hb_000645_070 Hb_000903_010 Hb_000903_010 Hb_002837_040--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002837_040--Hb_000154_050 Hb_002837_040--Hb_002749_080 Hb_003058_100 Hb_003058_100 Hb_002837_040--Hb_003058_100 Hb_002837_040--Hb_006588_160 Hb_006588_160--Hb_000154_050 Hb_004013_030 Hb_004013_030 Hb_006588_160--Hb_004013_030 Hb_000001_090 Hb_000001_090 Hb_006588_160--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_006588_160--Hb_001053_080 Hb_001450_020 Hb_001450_020 Hb_006588_160--Hb_001450_020 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_001002_060 Hb_001002_060 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090 Hb_000787_060 Hb_000787_060 Hb_002749_080--Hb_000787_060 Hb_002749_080--Hb_000903_010 Hb_002871_140 Hb_002871_140 Hb_002749_080--Hb_002871_140 Hb_000579_070 Hb_000579_070 Hb_002749_080--Hb_000579_070 Hb_000056_160 Hb_000056_160 Hb_002749_080--Hb_000056_160 Hb_016347_020 Hb_016347_020 Hb_000684_080--Hb_016347_020 Hb_121089_030 Hb_121089_030 Hb_000684_080--Hb_121089_030 Hb_000317_510 Hb_000317_510 Hb_000684_080--Hb_000317_510 Hb_000373_080 Hb_000373_080 Hb_000684_080--Hb_000373_080 Hb_030736_060 Hb_030736_060 Hb_000684_080--Hb_030736_060 Hb_002784_030 Hb_002784_030 Hb_000684_080--Hb_002784_030 Hb_004032_370 Hb_004032_370 Hb_004096_060--Hb_004032_370 Hb_033642_040 Hb_033642_040 Hb_004096_060--Hb_033642_040 Hb_004096_060--Hb_025668_010 Hb_000724_020 Hb_000724_020 Hb_004096_060--Hb_000724_020 Hb_004096_060--Hb_001002_060 Hb_002326_110 Hb_002326_110 Hb_004096_060--Hb_002326_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.1878 21.0039 67.353 73.3387 39.708 30.6255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9926 6.84955 27.5074 37.2439 55.1456

CAGE analysis