Hb_000479_150

Information

Type -
Description -
Location Contig479: 104182-106628
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12650g
description POPTRDRAFT_577718; glycosyl transferase family 8 family protein
nr
ID XP_002324094.2
description glycosyl transferase family 8 family protein [Populus trichocarpa]
swissprot
ID Q0WV13
description Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1
trembl
ID B9IK47
description Hexosyltransferase OS=Populus trichocarpa GN=POPTR_0017s12650g PE=3 SV=2
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 13 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44618: 82715-107275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_150 0.0 - - glycosyl transferase family 8 family protein [Populus trichocarpa]
2 Hb_030827_020 0.102213752 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
3 Hb_004357_020 0.103305392 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
4 Hb_000334_220 0.1037046044 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
5 Hb_002267_140 0.1079946237 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
6 Hb_138596_010 0.1093509653 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
7 Hb_002843_120 0.1111002908 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
8 Hb_001728_050 0.1132023485 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
9 Hb_011310_210 0.1136559841 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
10 Hb_000603_280 0.1150024873 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
11 Hb_010139_040 0.1162270686 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001817_150 0.1163178202 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
13 Hb_002025_060 0.1174271871 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]
14 Hb_001269_210 0.117475179 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
15 Hb_000309_040 0.1180652644 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
16 Hb_000567_190 0.1183635266 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
17 Hb_001008_170 0.1184260103 transcription factor TF Family: mTERF RNA binding protein, putative [Ricinus communis]
18 Hb_000856_190 0.1187778377 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
19 Hb_001158_070 0.118906643 - - Protein DEK, putative [Ricinus communis]
20 Hb_000162_030 0.119551412 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000479_150 Hb_000479_150 Hb_030827_020 Hb_030827_020 Hb_000479_150--Hb_030827_020 Hb_004357_020 Hb_004357_020 Hb_000479_150--Hb_004357_020 Hb_000334_220 Hb_000334_220 Hb_000479_150--Hb_000334_220 Hb_002267_140 Hb_002267_140 Hb_000479_150--Hb_002267_140 Hb_138596_010 Hb_138596_010 Hb_000479_150--Hb_138596_010 Hb_002843_120 Hb_002843_120 Hb_000479_150--Hb_002843_120 Hb_030827_020--Hb_002267_140 Hb_003894_120 Hb_003894_120 Hb_030827_020--Hb_003894_120 Hb_000025_730 Hb_000025_730 Hb_030827_020--Hb_000025_730 Hb_000479_220 Hb_000479_220 Hb_030827_020--Hb_000479_220 Hb_000803_070 Hb_000803_070 Hb_030827_020--Hb_000803_070 Hb_030827_020--Hb_002843_120 Hb_001728_050 Hb_001728_050 Hb_004357_020--Hb_001728_050 Hb_000162_030 Hb_000162_030 Hb_004357_020--Hb_000162_030 Hb_003633_070 Hb_003633_070 Hb_004357_020--Hb_003633_070 Hb_001247_130 Hb_001247_130 Hb_004357_020--Hb_001247_130 Hb_000070_080 Hb_000070_080 Hb_004357_020--Hb_000070_080 Hb_000162_280 Hb_000162_280 Hb_004357_020--Hb_000162_280 Hb_005016_160 Hb_005016_160 Hb_000334_220--Hb_005016_160 Hb_005541_010 Hb_005541_010 Hb_000334_220--Hb_005541_010 Hb_003052_140 Hb_003052_140 Hb_000334_220--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_000334_220--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_000334_220--Hb_000336_250 Hb_000334_220--Hb_000479_220 Hb_008253_030 Hb_008253_030 Hb_002267_140--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002267_140--Hb_001767_140 Hb_002267_140--Hb_138596_010 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002253_080 Hb_002253_080 Hb_002267_140--Hb_002253_080 Hb_002267_140--Hb_002843_120 Hb_008695_110 Hb_008695_110 Hb_138596_010--Hb_008695_110 Hb_005993_050 Hb_005993_050 Hb_138596_010--Hb_005993_050 Hb_138596_010--Hb_000479_220 Hb_138596_010--Hb_002843_120 Hb_000343_250 Hb_000343_250 Hb_138596_010--Hb_000343_250 Hb_000603_280 Hb_000603_280 Hb_002843_120--Hb_000603_280 Hb_000077_140 Hb_000077_140 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_013399_100 Hb_013399_100 Hb_002843_120--Hb_013399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3173 13.3509 12.5702 10.856 10.8862 14.547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9058 8.84099 16.284 6.4535 8.31182

CAGE analysis