Hb_119886_040

Information

Type -
Description -
Location Contig119886: 23630-24178
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05953: 23255-24231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119886_040 0.0 - - -
2 Hb_000483_180 0.1146359734 - - -
3 Hb_008556_020 0.1618675572 - - -
4 Hb_002311_230 0.1659074906 - - -
5 Hb_007223_010 0.1805106125 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011639_010 0.1808911296 - - -
7 Hb_005962_010 0.1814059527 - - -
8 Hb_007044_010 0.1833684465 - - -
9 Hb_011639_150 0.1858784879 - - -
10 Hb_000024_070 0.1943241708 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
11 Hb_007257_010 0.1951286942 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
12 Hb_000181_360 0.1957880737 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
13 Hb_000170_060 0.1993828579 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
14 Hb_045870_010 0.1994972493 - - -
15 Hb_000488_010 0.1995102941 - - 18.1 kDa class I heat shock protein [Jatropha curcas]
16 Hb_008616_030 0.2007029234 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
17 Hb_002188_090 0.2108552684 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
18 Hb_004884_020 0.2116578626 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
19 Hb_000260_370 0.2117197734 - - protein phosphatase-1, putative [Ricinus communis]
20 Hb_002686_330 0.2126226085 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_119886_040 Hb_119886_040 Hb_000483_180 Hb_000483_180 Hb_119886_040--Hb_000483_180 Hb_008556_020 Hb_008556_020 Hb_119886_040--Hb_008556_020 Hb_002311_230 Hb_002311_230 Hb_119886_040--Hb_002311_230 Hb_007223_010 Hb_007223_010 Hb_119886_040--Hb_007223_010 Hb_011639_010 Hb_011639_010 Hb_119886_040--Hb_011639_010 Hb_005962_010 Hb_005962_010 Hb_119886_040--Hb_005962_010 Hb_009558_040 Hb_009558_040 Hb_000483_180--Hb_009558_040 Hb_000488_010 Hb_000488_010 Hb_000483_180--Hb_000488_010 Hb_000483_180--Hb_002311_230 Hb_000024_070 Hb_000024_070 Hb_000483_180--Hb_000024_070 Hb_000181_360 Hb_000181_360 Hb_000483_180--Hb_000181_360 Hb_008556_020--Hb_005962_010 Hb_000078_170 Hb_000078_170 Hb_008556_020--Hb_000078_170 Hb_011639_150 Hb_011639_150 Hb_008556_020--Hb_011639_150 Hb_008556_020--Hb_002311_230 Hb_007044_010 Hb_007044_010 Hb_008556_020--Hb_007044_010 Hb_002311_230--Hb_005962_010 Hb_002311_230--Hb_007044_010 Hb_002311_230--Hb_011639_010 Hb_007481_030 Hb_007481_030 Hb_007223_010--Hb_007481_030 Hb_002370_040 Hb_002370_040 Hb_007223_010--Hb_002370_040 Hb_000201_040 Hb_000201_040 Hb_007223_010--Hb_000201_040 Hb_007223_010--Hb_000181_360 Hb_002805_170 Hb_002805_170 Hb_007223_010--Hb_002805_170 Hb_000265_250 Hb_000265_250 Hb_007223_010--Hb_000265_250 Hb_011639_010--Hb_007044_010 Hb_008616_030 Hb_008616_030 Hb_011639_010--Hb_008616_030 Hb_004631_160 Hb_004631_160 Hb_011639_010--Hb_004631_160 Hb_011798_040 Hb_011798_040 Hb_011639_010--Hb_011798_040 Hb_001522_010 Hb_001522_010 Hb_011639_010--Hb_001522_010 Hb_011639_010--Hb_000483_180 Hb_005962_010--Hb_000078_170 Hb_005962_010--Hb_011639_150 Hb_001766_040 Hb_001766_040 Hb_005962_010--Hb_001766_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.5084 13.3616 4.88154 1.62975 20.3423 10.5952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.572558 1.34933 0.188927 2.76852 8.3335

CAGE analysis