Hb_000201_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig201: 74407-78615
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01550g
description POPTRDRAFT_560178; hypothetical protein
nr
ID XP_011008978.1
description PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID B9HCU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01550g PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_040 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
2 Hb_007223_010 0.162808102 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001195_150 0.172155335 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
4 Hb_000163_280 0.1803205848 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
5 Hb_030627_040 0.1900809832 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
6 Hb_100525_010 0.1936448508 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
7 Hb_057451_010 0.2029553692 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
8 Hb_008616_030 0.2031383417 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
9 Hb_097646_010 0.2042477992 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
10 Hb_010584_010 0.2047577164 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
11 Hb_001522_010 0.2049069539 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
12 Hb_007680_020 0.2077133535 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_000640_200 0.2081859461 - - hypothetical protein RCOM_1346600 [Ricinus communis]
14 Hb_007044_010 0.2088936078 - - -
15 Hb_000720_070 0.212256597 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
16 Hb_000116_460 0.2133514836 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
17 Hb_002349_050 0.2142955893 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
18 Hb_000024_070 0.2144327844 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
19 Hb_011798_040 0.2149054953 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
20 Hb_002965_030 0.2156369636 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]

Gene co-expression network

sample Hb_000201_040 Hb_000201_040 Hb_007223_010 Hb_007223_010 Hb_000201_040--Hb_007223_010 Hb_001195_150 Hb_001195_150 Hb_000201_040--Hb_001195_150 Hb_000163_280 Hb_000163_280 Hb_000201_040--Hb_000163_280 Hb_030627_040 Hb_030627_040 Hb_000201_040--Hb_030627_040 Hb_100525_010 Hb_100525_010 Hb_000201_040--Hb_100525_010 Hb_057451_010 Hb_057451_010 Hb_000201_040--Hb_057451_010 Hb_007481_030 Hb_007481_030 Hb_007223_010--Hb_007481_030 Hb_002370_040 Hb_002370_040 Hb_007223_010--Hb_002370_040 Hb_000181_360 Hb_000181_360 Hb_007223_010--Hb_000181_360 Hb_002805_170 Hb_002805_170 Hb_007223_010--Hb_002805_170 Hb_000265_250 Hb_000265_250 Hb_007223_010--Hb_000265_250 Hb_006615_100 Hb_006615_100 Hb_001195_150--Hb_006615_100 Hb_128376_010 Hb_128376_010 Hb_001195_150--Hb_128376_010 Hb_000116_460 Hb_000116_460 Hb_001195_150--Hb_000116_460 Hb_008246_030 Hb_008246_030 Hb_001195_150--Hb_008246_030 Hb_000281_010 Hb_000281_010 Hb_001195_150--Hb_000281_010 Hb_007680_020 Hb_007680_020 Hb_001195_150--Hb_007680_020 Hb_138600_010 Hb_138600_010 Hb_000163_280--Hb_138600_010 Hb_000163_280--Hb_030627_040 Hb_002159_030 Hb_002159_030 Hb_000163_280--Hb_002159_030 Hb_000040_050 Hb_000040_050 Hb_000163_280--Hb_000040_050 Hb_000250_080 Hb_000250_080 Hb_000163_280--Hb_000250_080 Hb_001390_010 Hb_001390_010 Hb_030627_040--Hb_001390_010 Hb_030627_040--Hb_000040_050 Hb_006882_010 Hb_006882_010 Hb_030627_040--Hb_006882_010 Hb_030627_040--Hb_002159_030 Hb_005460_030 Hb_005460_030 Hb_030627_040--Hb_005460_030 Hb_003436_050 Hb_003436_050 Hb_030627_040--Hb_003436_050 Hb_097646_010 Hb_097646_010 Hb_100525_010--Hb_097646_010 Hb_000571_150 Hb_000571_150 Hb_100525_010--Hb_000571_150 Hb_003895_030 Hb_003895_030 Hb_100525_010--Hb_003895_030 Hb_002742_080 Hb_002742_080 Hb_100525_010--Hb_002742_080 Hb_100525_010--Hb_002370_040 Hb_003376_260 Hb_003376_260 Hb_100525_010--Hb_003376_260 Hb_009028_030 Hb_009028_030 Hb_057451_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_057451_010--Hb_000640_200 Hb_003157_010 Hb_003157_010 Hb_057451_010--Hb_003157_010 Hb_003710_040 Hb_003710_040 Hb_057451_010--Hb_003710_040 Hb_004899_070 Hb_004899_070 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5548 14.3112 3.57136 4.12263 18.1767 11.9974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.193156 0.101306 3.27988 1.04164 4.55154

CAGE analysis