Hb_097646_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig97646: 119-1207
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01550g
description POPTRDRAFT_560178; hypothetical protein
nr
ID XP_011008978.1
description PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID B9HCU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01550g PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64111: 99-1234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097646_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
2 Hb_100525_010 0.1176646192 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
3 Hb_024698_010 0.1178502156 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
4 Hb_003001_040 0.1416738208 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
5 Hb_000056_010 0.1497609032 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
6 Hb_003376_260 0.1613879981 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
7 Hb_027380_230 0.1729272166 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
8 Hb_000979_240 0.1835570367 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
9 Hb_132840_100 0.184238563 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
10 Hb_005843_160 0.185766822 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
11 Hb_007423_030 0.1862998993 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
12 Hb_003060_050 0.1872566498 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
13 Hb_001488_270 0.1937436884 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
14 Hb_011164_010 0.19606203 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
15 Hb_000062_030 0.1990768995 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
16 Hb_000608_260 0.2000465713 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
17 Hb_000201_040 0.2042477992 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
18 Hb_004970_180 0.2046151511 - - -
19 Hb_006745_010 0.2051299686 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
20 Hb_008147_050 0.2054744899 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]

Gene co-expression network

sample Hb_097646_010 Hb_097646_010 Hb_100525_010 Hb_100525_010 Hb_097646_010--Hb_100525_010 Hb_024698_010 Hb_024698_010 Hb_097646_010--Hb_024698_010 Hb_003001_040 Hb_003001_040 Hb_097646_010--Hb_003001_040 Hb_000056_010 Hb_000056_010 Hb_097646_010--Hb_000056_010 Hb_003376_260 Hb_003376_260 Hb_097646_010--Hb_003376_260 Hb_027380_230 Hb_027380_230 Hb_097646_010--Hb_027380_230 Hb_000571_150 Hb_000571_150 Hb_100525_010--Hb_000571_150 Hb_003895_030 Hb_003895_030 Hb_100525_010--Hb_003895_030 Hb_002742_080 Hb_002742_080 Hb_100525_010--Hb_002742_080 Hb_002370_040 Hb_002370_040 Hb_100525_010--Hb_002370_040 Hb_100525_010--Hb_003376_260 Hb_024698_010--Hb_000056_010 Hb_024698_010--Hb_003376_260 Hb_024698_010--Hb_003001_040 Hb_005048_140 Hb_005048_140 Hb_024698_010--Hb_005048_140 Hb_116420_040 Hb_116420_040 Hb_024698_010--Hb_116420_040 Hb_020805_100 Hb_020805_100 Hb_003001_040--Hb_020805_100 Hb_000334_130 Hb_000334_130 Hb_003001_040--Hb_000334_130 Hb_000979_240 Hb_000979_240 Hb_003001_040--Hb_000979_240 Hb_000358_200 Hb_000358_200 Hb_003001_040--Hb_000358_200 Hb_000056_010--Hb_003001_040 Hb_000579_030 Hb_000579_030 Hb_000056_010--Hb_000579_030 Hb_006422_020 Hb_006422_020 Hb_000056_010--Hb_006422_020 Hb_004116_180 Hb_004116_180 Hb_000056_010--Hb_004116_180 Hb_074197_020 Hb_074197_020 Hb_003376_260--Hb_074197_020 Hb_003376_260--Hb_116420_040 Hb_002301_310 Hb_002301_310 Hb_003376_260--Hb_002301_310 Hb_003376_260--Hb_005048_140 Hb_004657_090 Hb_004657_090 Hb_003376_260--Hb_004657_090 Hb_004884_030 Hb_004884_030 Hb_027380_230--Hb_004884_030 Hb_008147_050 Hb_008147_050 Hb_027380_230--Hb_008147_050 Hb_000206_120 Hb_000206_120 Hb_027380_230--Hb_000206_120 Hb_007257_010 Hb_007257_010 Hb_027380_230--Hb_007257_010 Hb_000376_060 Hb_000376_060 Hb_027380_230--Hb_000376_060 Hb_027380_230--Hb_003376_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91579 14.3815 5.62313 11.9462 10.9142 9.24127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.228097 0.143529 3.18705 1.10895 7.60461

CAGE analysis