Hb_008147_050

Information

Type -
Description -
Location Contig8147: 33255-34581
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10570g
description POPTRDRAFT_556174; hypothetical protein
nr
ID XP_012088169.1
description PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A9PCC5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10570g PE=2 SV=1
Gene Ontology
ID GO:0016020
description PREDICTED: uncharacterized protein LOC105646845

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59332: 33452-33550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008147_050 0.0 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
2 Hb_011164_010 0.1334473222 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
3 Hb_027380_230 0.1361294092 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
4 Hb_000062_030 0.1492356501 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
5 Hb_000505_110 0.1513372051 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
6 Hb_000206_120 0.16739679 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
7 Hb_004884_030 0.1697140823 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
8 Hb_001504_090 0.1743997307 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_001031_040 0.1755529804 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007257_010 0.1823532092 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
11 Hb_001390_010 0.1864190205 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
12 Hb_000366_190 0.187657391 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
13 Hb_000421_130 0.1966544329 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
14 Hb_030627_040 0.1986151856 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
15 Hb_001301_090 0.2002909317 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000264_010 0.2018746262 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
17 Hb_000197_290 0.2033232444 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
18 Hb_132840_100 0.2034491943 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
19 Hb_009119_030 0.2037439075 - - GMFP4 [Medicago truncatula]
20 Hb_010254_020 0.2040596704 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_008147_050 Hb_008147_050 Hb_011164_010 Hb_011164_010 Hb_008147_050--Hb_011164_010 Hb_027380_230 Hb_027380_230 Hb_008147_050--Hb_027380_230 Hb_000062_030 Hb_000062_030 Hb_008147_050--Hb_000062_030 Hb_000505_110 Hb_000505_110 Hb_008147_050--Hb_000505_110 Hb_000206_120 Hb_000206_120 Hb_008147_050--Hb_000206_120 Hb_004884_030 Hb_004884_030 Hb_008147_050--Hb_004884_030 Hb_006745_010 Hb_006745_010 Hb_011164_010--Hb_006745_010 Hb_011164_010--Hb_000062_030 Hb_002039_050 Hb_002039_050 Hb_011164_010--Hb_002039_050 Hb_011164_010--Hb_000505_110 Hb_011164_010--Hb_027380_230 Hb_027380_230--Hb_004884_030 Hb_027380_230--Hb_000206_120 Hb_007257_010 Hb_007257_010 Hb_027380_230--Hb_007257_010 Hb_000376_060 Hb_000376_060 Hb_027380_230--Hb_000376_060 Hb_003376_260 Hb_003376_260 Hb_027380_230--Hb_003376_260 Hb_000062_030--Hb_000505_110 Hb_000366_190 Hb_000366_190 Hb_000062_030--Hb_000366_190 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_013818_030 Hb_013818_030 Hb_000062_030--Hb_013818_030 Hb_186857_010 Hb_186857_010 Hb_000062_030--Hb_186857_010 Hb_000599_170 Hb_000599_170 Hb_000505_110--Hb_000599_170 Hb_001051_090 Hb_001051_090 Hb_000505_110--Hb_001051_090 Hb_000505_110--Hb_004884_030 Hb_000505_110--Hb_013818_030 Hb_102269_010 Hb_102269_010 Hb_000206_120--Hb_102269_010 Hb_010925_020 Hb_010925_020 Hb_000206_120--Hb_010925_020 Hb_007044_230 Hb_007044_230 Hb_000206_120--Hb_007044_230 Hb_000935_090 Hb_000935_090 Hb_000206_120--Hb_000935_090 Hb_132840_100 Hb_132840_100 Hb_000206_120--Hb_132840_100 Hb_004223_290 Hb_004223_290 Hb_000206_120--Hb_004223_290 Hb_000482_150 Hb_000482_150 Hb_004884_030--Hb_000482_150 Hb_167973_010 Hb_167973_010 Hb_004884_030--Hb_167973_010 Hb_004701_050 Hb_004701_050 Hb_004884_030--Hb_004701_050 Hb_006355_020 Hb_006355_020 Hb_004884_030--Hb_006355_020 Hb_004884_030--Hb_000376_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15553 3.03386 1.08521 3.0756 6.19162 3.55801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.442306 0.0948891 0.353173 0.658775 2.423

CAGE analysis