Hb_011164_010

Information

Type -
Description -
Location Contig11164: 1556-2026
Sequence    

Annotation

kegg
ID pxb:103927502
description 17.1 kDa class II heat shock protein-like
nr
ID AAD41409.1
description cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
swissprot
ID P05477
description 17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1
trembl
ID Q9XGS6
description Cytosolic class II low molecular weight heat shock protein OS=Prunus dulcis GN=hsp17.5 PE=2 SV=1
Gene Ontology
ID GO:0005737
description kda class ii heat shock

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03524: 1416-2108
cDNA
(Sanger)
(ID:Location)		 008_P01.ab1: 1483-2108 , 017_J19.ab1: 1442-2107 , 025_E07.ab1: 1417-2112 , 026_G18.ab1: 1442-2107 , 026_J12.ab1: 1416-2107 , 032_A21.ab1: 1445-2112 , 033_B08.ab1: 1485-2154 , 034_H03.ab1: 1440-2112 , 053_E02.ab1: 1483-2108

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011164_010 0.0 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
2 Hb_008147_050 0.1334473222 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
3 Hb_006745_010 0.1619981418 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
4 Hb_000062_030 0.1677349459 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
5 Hb_002039_050 0.1778286743 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
6 Hb_000505_110 0.1783237891 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
7 Hb_027380_230 0.1786097855 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
8 Hb_005736_050 0.1794720522 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
9 Hb_007257_010 0.1951434273 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
10 Hb_001269_310 0.1954520084 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
11 Hb_097646_010 0.19606203 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
12 Hb_001307_010 0.1981757424 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
13 Hb_000422_110 0.1993451182 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
14 Hb_100525_010 0.2011635266 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
15 Hb_002320_070 0.2090398409 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000197_290 0.2099521727 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
17 Hb_003001_040 0.2122935525 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
18 Hb_001031_040 0.2130404582 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000206_120 0.2139766548 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
20 Hb_004296_010 0.214550009 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_011164_010 Hb_011164_010 Hb_008147_050 Hb_008147_050 Hb_011164_010--Hb_008147_050 Hb_006745_010 Hb_006745_010 Hb_011164_010--Hb_006745_010 Hb_000062_030 Hb_000062_030 Hb_011164_010--Hb_000062_030 Hb_002039_050 Hb_002039_050 Hb_011164_010--Hb_002039_050 Hb_000505_110 Hb_000505_110 Hb_011164_010--Hb_000505_110 Hb_027380_230 Hb_027380_230 Hb_011164_010--Hb_027380_230 Hb_008147_050--Hb_027380_230 Hb_008147_050--Hb_000062_030 Hb_008147_050--Hb_000505_110 Hb_000206_120 Hb_000206_120 Hb_008147_050--Hb_000206_120 Hb_004884_030 Hb_004884_030 Hb_008147_050--Hb_004884_030 Hb_030827_060 Hb_030827_060 Hb_006745_010--Hb_030827_060 Hb_000422_110 Hb_000422_110 Hb_006745_010--Hb_000422_110 Hb_001307_010 Hb_001307_010 Hb_006745_010--Hb_001307_010 Hb_004648_070 Hb_004648_070 Hb_006745_010--Hb_004648_070 Hb_000979_240 Hb_000979_240 Hb_006745_010--Hb_000979_240 Hb_002999_060 Hb_002999_060 Hb_006745_010--Hb_002999_060 Hb_000062_030--Hb_000505_110 Hb_000366_190 Hb_000366_190 Hb_000062_030--Hb_000366_190 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_013818_030 Hb_013818_030 Hb_000062_030--Hb_013818_030 Hb_186857_010 Hb_186857_010 Hb_000062_030--Hb_186857_010 Hb_002039_050--Hb_002999_060 Hb_002039_050--Hb_006745_010 Hb_002039_050--Hb_000062_030 Hb_001504_090 Hb_001504_090 Hb_002039_050--Hb_001504_090 Hb_013394_060 Hb_013394_060 Hb_002039_050--Hb_013394_060 Hb_000599_170 Hb_000599_170 Hb_000505_110--Hb_000599_170 Hb_001051_090 Hb_001051_090 Hb_000505_110--Hb_001051_090 Hb_000505_110--Hb_004884_030 Hb_000505_110--Hb_013818_030 Hb_027380_230--Hb_004884_030 Hb_027380_230--Hb_000206_120 Hb_007257_010 Hb_007257_010 Hb_027380_230--Hb_007257_010 Hb_000376_060 Hb_000376_060 Hb_027380_230--Hb_000376_060 Hb_003376_260 Hb_003376_260 Hb_027380_230--Hb_003376_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
329.366 1740.41 685.029 1166.42 2027.03 1317.55
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
161.674 131.66 120.996 86.3545 657.85

CAGE analysis