Hb_000505_110

Information

Type -
Description -
Location Contig505: 116898-128153
Sequence    

Annotation

kegg
ID rcu:RCOM_0003350
description Pyrophosphate-energized vacuolar membrane proton pump, putative (EC:1.3.1.74)
nr
ID XP_012081156.1
description PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
swissprot
ID P21616
description Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=4
trembl
ID A0A067K5F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17005 PE=3 SV=1
Gene Ontology
ID GO:0016020
description pyrophosphate-energized vacuolar membrane proton pump

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46007: 116868-124031 , PASA_asmbl_46012: 128276-128443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_110 0.0 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
2 Hb_000062_030 0.0992470104 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
3 Hb_000599_170 0.1477371882 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
4 Hb_008147_050 0.1513372051 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
5 Hb_001051_090 0.1530229552 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
6 Hb_004884_030 0.1683780075 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
7 Hb_013818_030 0.1685435905 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001269_310 0.1686420615 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
9 Hb_027380_030 0.1736113858 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
10 Hb_002805_060 0.1744422361 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
11 Hb_011164_010 0.1783237891 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
12 Hb_027380_230 0.1788003795 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
13 Hb_002896_060 0.1792992463 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
14 Hb_000366_190 0.1793410241 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
15 Hb_003894_040 0.1816300442 - - nucleotide binding protein, putative [Ricinus communis]
16 Hb_001031_040 0.1844205768 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006618_040 0.1858203859 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
18 Hb_000453_140 0.1880712389 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
19 Hb_010417_060 0.1892614981 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
20 Hb_001301_090 0.1893487344 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000505_110 Hb_000505_110 Hb_000062_030 Hb_000062_030 Hb_000505_110--Hb_000062_030 Hb_000599_170 Hb_000599_170 Hb_000505_110--Hb_000599_170 Hb_008147_050 Hb_008147_050 Hb_000505_110--Hb_008147_050 Hb_001051_090 Hb_001051_090 Hb_000505_110--Hb_001051_090 Hb_004884_030 Hb_004884_030 Hb_000505_110--Hb_004884_030 Hb_013818_030 Hb_013818_030 Hb_000505_110--Hb_013818_030 Hb_000366_190 Hb_000366_190 Hb_000062_030--Hb_000366_190 Hb_000062_030--Hb_008147_050 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_000062_030--Hb_013818_030 Hb_186857_010 Hb_186857_010 Hb_000062_030--Hb_186857_010 Hb_027380_030 Hb_027380_030 Hb_000599_170--Hb_027380_030 Hb_002805_060 Hb_002805_060 Hb_000599_170--Hb_002805_060 Hb_003894_040 Hb_003894_040 Hb_000599_170--Hb_003894_040 Hb_000599_170--Hb_001051_090 Hb_006915_020 Hb_006915_020 Hb_000599_170--Hb_006915_020 Hb_002092_100 Hb_002092_100 Hb_000599_170--Hb_002092_100 Hb_011164_010 Hb_011164_010 Hb_008147_050--Hb_011164_010 Hb_027380_230 Hb_027380_230 Hb_008147_050--Hb_027380_230 Hb_000206_120 Hb_000206_120 Hb_008147_050--Hb_000206_120 Hb_008147_050--Hb_004884_030 Hb_002896_060 Hb_002896_060 Hb_001051_090--Hb_002896_060 Hb_001051_090--Hb_027380_030 Hb_001051_090--Hb_002805_060 Hb_004223_110 Hb_004223_110 Hb_001051_090--Hb_004223_110 Hb_000453_140 Hb_000453_140 Hb_001051_090--Hb_000453_140 Hb_004884_030--Hb_027380_230 Hb_000482_150 Hb_000482_150 Hb_004884_030--Hb_000482_150 Hb_167973_010 Hb_167973_010 Hb_004884_030--Hb_167973_010 Hb_004701_050 Hb_004701_050 Hb_004884_030--Hb_004701_050 Hb_006355_020 Hb_006355_020 Hb_004884_030--Hb_006355_020 Hb_000376_060 Hb_000376_060 Hb_004884_030--Hb_000376_060 Hb_032920_130 Hb_032920_130 Hb_013818_030--Hb_032920_130 Hb_132840_100 Hb_132840_100 Hb_013818_030--Hb_132840_100 Hb_010417_060 Hb_010417_060 Hb_013818_030--Hb_010417_060 Hb_003097_080 Hb_003097_080 Hb_013818_030--Hb_003097_080 Hb_001301_090 Hb_001301_090 Hb_013818_030--Hb_001301_090 Hb_158604_010 Hb_158604_010 Hb_013818_030--Hb_158604_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1285 78.0015 77.1504 68.1622 163.29 69.4713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.48052 2.64787 7.75287 33.1098 49.0045

CAGE analysis