Hb_001031_040

Information

Type -
Description -
Location Contig1031: 81112-82847
Sequence    

Annotation

kegg
ID rcu:RCOM_0610220
description hypothetical protein
nr
ID XP_002522008.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7N9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0610220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01261: 81113-81747 , PASA_asmbl_01262: 81113-81747 , PASA_asmbl_01263: 82488-82716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001031_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002044_170 0.0955198973 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
3 Hb_000197_290 0.106010827 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
4 Hb_010417_060 0.106932965 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
5 Hb_001301_090 0.1070421351 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000286_170 0.1110723658 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
7 Hb_011671_230 0.1121995889 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005731_090 0.1131642528 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
9 Hb_001369_350 0.1134254532 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
10 Hb_067193_010 0.1152962546 - - -
11 Hb_000206_120 0.1166707793 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
12 Hb_004195_060 0.1181728278 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
13 Hb_030627_060 0.1183924878 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_132840_100 0.118706727 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
15 Hb_000062_470 0.1201226278 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
16 Hb_001366_210 0.1205861756 - - cathepsin B, putative [Ricinus communis]
17 Hb_000176_130 0.1223270435 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
18 Hb_032920_130 0.1240876317 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
19 Hb_000046_180 0.1252492414 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
20 Hb_001221_160 0.1256904119 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]

Gene co-expression network

sample Hb_001031_040 Hb_001031_040 Hb_002044_170 Hb_002044_170 Hb_001031_040--Hb_002044_170 Hb_000197_290 Hb_000197_290 Hb_001031_040--Hb_000197_290 Hb_010417_060 Hb_010417_060 Hb_001031_040--Hb_010417_060 Hb_001301_090 Hb_001301_090 Hb_001031_040--Hb_001301_090 Hb_000286_170 Hb_000286_170 Hb_001031_040--Hb_000286_170 Hb_011671_230 Hb_011671_230 Hb_001031_040--Hb_011671_230 Hb_001235_230 Hb_001235_230 Hb_002044_170--Hb_001235_230 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_032920_130 Hb_032920_130 Hb_002044_170--Hb_032920_130 Hb_000261_030 Hb_000261_030 Hb_002044_170--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_002044_170--Hb_000176_130 Hb_000035_410 Hb_000035_410 Hb_002044_170--Hb_000035_410 Hb_007813_030 Hb_007813_030 Hb_000197_290--Hb_007813_030 Hb_001488_270 Hb_001488_270 Hb_000197_290--Hb_001488_270 Hb_000574_510 Hb_000574_510 Hb_000197_290--Hb_000574_510 Hb_000062_470 Hb_000062_470 Hb_000197_290--Hb_000062_470 Hb_003604_040 Hb_003604_040 Hb_000197_290--Hb_003604_040 Hb_003120_070 Hb_003120_070 Hb_000197_290--Hb_003120_070 Hb_010417_060--Hb_000062_470 Hb_010417_060--Hb_032920_130 Hb_000917_160 Hb_000917_160 Hb_010417_060--Hb_000917_160 Hb_010417_060--Hb_002044_170 Hb_000191_130 Hb_000191_130 Hb_010417_060--Hb_000191_130 Hb_010417_060--Hb_000176_130 Hb_067193_010 Hb_067193_010 Hb_001301_090--Hb_067193_010 Hb_001301_090--Hb_002044_170 Hb_001301_090--Hb_010417_060 Hb_005731_090 Hb_005731_090 Hb_001301_090--Hb_005731_090 Hb_001301_090--Hb_032920_130 Hb_004453_110 Hb_004453_110 Hb_001301_090--Hb_004453_110 Hb_000286_170--Hb_067193_010 Hb_000030_060 Hb_000030_060 Hb_000286_170--Hb_000030_060 Hb_007558_070 Hb_007558_070 Hb_000286_170--Hb_007558_070 Hb_000286_170--Hb_010417_060 Hb_000406_230 Hb_000406_230 Hb_000286_170--Hb_000406_230 Hb_000286_170--Hb_000062_470 Hb_005214_150 Hb_005214_150 Hb_011671_230--Hb_005214_150 Hb_000949_010 Hb_000949_010 Hb_011671_230--Hb_000949_010 Hb_000768_180 Hb_000768_180 Hb_011671_230--Hb_000768_180 Hb_011671_230--Hb_000176_130 Hb_002784_010 Hb_002784_010 Hb_011671_230--Hb_002784_010 Hb_011671_230--Hb_000574_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22767 7.55993 2.89849 5.85193 10.1111 8.60033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78781 1.16177 1.13953 5.0303 4.12078

CAGE analysis